Non-Coding RNA Search

Ss1.1-Pig3-SRG8003E21.3

Sequence:


               
               CTGTCATGTGAGGAAGGAGCAGCTCCTTAATTTTTGCTCTTTGTGAGCAAGATGCAATCC
GTGTTTCCCGACGTTGGGACCATCCGCTCACCTCACCATGTTCCTATGTAATTGTGTCAC
GTAATGGGAAGTTGTAATAGGCAATTGGGTTCTGTAATTCAGTTTGCAAAGCATGCAAAC
ATAAGATAACTAGGTTAAATGCAAATAGGCATTACACTAAGGTATGAAAAATGGGGGCGG
GGGTGGGGAGAAAAGATGCTGTATTCATAACTTAGAAACAACGTGATTTTAATCCTCATG
TGCCTCGAAGTGTAGAGTTTATTAAACTTATTTATCCTCTAGTTTAATTTCACCACATAC
TGTAACACAGATGCATCCTGTGTGTGTGAATCTACATGTCTTCTGTACATATTTACAGTG
TGTCTTCTTTGTAATAAGCAGCCTCTGAGTGAAACGCTTCTTCAGGAGTAAGTCGATGTG
GTCATTGTTCACAATGTTCCGTGCAAATAGACTGTTAGCAAATAGCCCATTATATATGAC
CCCATATCAAAATGTGCTTTTAATTTTTCAAAACCTTTTGGTTACTGTCTATAACTTTGT
CCCTTGGGCCAATTCTTTCATTACTGAGAGCTCTGATTTTAATGTATTCCCATAAACAGT
GACTGTAGGTACCCTGTAGTCAGATATGTACACTTTCGTCAAGTAAACACTACTGGCCTT
AATGATTTTAGTATTTTCAGGTGCTTTTTTTCATTTTTGATGTAGCATTTTTTTTTCTAG
TATGGAGTATCATGAACCTGGGACCAATTCAAAAGAATTTCTAAATCTGAAGATTCCAAG
ACAATGCAGTATTTTCTGTTCTTGCTGTAAAAAGTATTTCTGTATTTTTAATAAAGAATG
GAATTTATATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCATGTGAGGAAGGAGCAGCTCCTTAATTTTTGCTCTTTGTGAGCAAGATGCAATCC
GTGTTTCCCGACGTTGGGACCATCCGCTCACCTCACCATGTTCCTATGTAATTGTGTCAC
GTAATGGGAAGTTGTAATAGGCAATTGGGTTCTGTAATTCAGTTTGCAAAGCATGCAAAC
ATAAGATAACTAGGTTAAATGCAAATAGGCATTACACTAAGGTATGAAAAATGGGGGCGG
GGGTGGGGAGAAAAGATGCTGTATTCATAACTTAGAAACAACGTGATTTTAATCCTCATG
TGCCTCGAAGTGTAGAGTTTATTAAACTTATTTATCCTCTAGTTTAATTTCACCACATAC
TGTAACACAGATGCATCCTGTGTGTGTGAATCTACATGTCTTCTGTACATATTTACAGTG
TGTCTTCTTTGTAATAAGCAGCCTCTGAGTGAAACGCTTCTTCAGGAGTAAGTCGATGTG
GTCATTGTTCACAATGTTCCGTGCAAATAGACTGTTAGCAAATAGCCCATTATATATGAC
CCCATATCAAAATGTGCTTTTAATTTTTCAAAACCTTTTGGTTACTGTCTATAACTTTGT
CCCTTGGGCCAATTCTTTCATTACTGAGAGCTCTGATTTTAATGTATTCCCATAAACAGT
GACTGTAGGTACCCTGTAGTCAGATATGTACACTTTCGTCAAGTAAACACTACTGGCCTT
AATGATTTTAGTATTTTCAGGTGCTTTTTTTCATTTTTGATGTAGCATTTTTTTTTCTAG
TATGGAGTATCATGAACCTGGGACCAATTCAAAAGAATTTCTAAATCTGAAGATTCCAAG
ACAATGCAGTATTTTCTGTTCTTGCTGTAAAAAGTATTTCTGTATTTTTAATAAAGAATG
GAATTTATATGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-318, + strand, RNAz p=0.964269

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-318, + strand, RNAz p=0.964269

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-912, gnl|bosTau2|chr25 (25521534-25520628)
               

               
               1-912, gnl|Hg17|chr6 (108124232-108123321)
               

               
               1-912, gnl|Mm7|chr10 (42779767-42780662)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr25 (25521534-25520628)
               

               
               1-912, gnl|Hg17|chr6 (108124232-108123321)
               

               
               1-912, gnl|Mm7|chr10 (42779767-42780662)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               vin (0.332557)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

	1-912, gnl\|bosTau2\|chr25 (25521534-25520628)
	1-912, gnl\|Hg17\|chr6 (108124232-108123321)
	1-912, gnl\|Mm7\|chr10 (42779767-42780662)

	vin (0.332557)
	lin (0.291206)
	lnt (0.284616)
	thg (0.253582)
	tra (0.123092)
	jej (0.0989218)