Ss1.1-Pig3-SRG8003F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCATGGGGAGCCGGGGGCCTGGCAGGCTGCCCCTGGTGCAGGTCCCCTACACGGTTCTG CTGTTGCCTCTGGAGACGAGCCGCCAAGAGCCAGGAGCCAGGAGCTTCTTCCTCTGGCTG CAGAGGATGCAAGCTCTGGAGCGGGAGCAGGATGCCCTGTGGCAGGGGCTGGAGCTGCTG GAGCACAGCCAGGCCTGGTATGAGGGCCGTCTGAGGGAGGCCCAGCAACAGCAGCTGCAT CTGGGTGCCCTTGGTGAGAATTTTCTAACAGATTTACAGTCAGAGGCTGGTGGCCCCCAG TTAGCCCAGATTCAAAAGGTGAACATCTGTTTGCAGAATCTGATTCAGGGGAAGTTCTCG CCACATCCCTTGAACAAAGCTAGTTCCTGTGACACCCAGGACTGGGAGGAAACACCAAGG AAGCAGAACTTGTGGCGGCAACAGGAGGGGTCAAGGCAGCAGAAAGAAGTCATTCAGCCA AAGGGAGCGATGGCTCAGCCGGGCTGCCCCAGTGGACAGAGGGGTCCTACCCATGTCTAA GGTCTCCACACCCTTCAGCTGTGCCAGCAAGGCTGAGTCAGAATCCCCAAACATCCTGGT GTAAAGGTTCTTCTCTGCTCCTGAAAACTTCTGCTTTATCTTTTTGGTACTGTACTCACT CTTCCCTATGTGCTGTGCATAAGTGATCTTTCTTTGAACTCCCTCTGAGTAGAAGACATG TTTATTGACATTATCCTTTGACTTTAAATACAAAAATAAAATAGAAGCGTCTCCAGAATT TCAGTTAAAACAATTCTATAAATAATACTTTCTGGTAGGAGGTGGGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCATGGGGAGCCGGGGGCCTGGCAGGCTGCCCCTGGTGCAGGTCCCCTACACGGTTCTG CTGTTGCCTCTGGAGACGAGCCGCCAAGAGCCAGGAGCCAGGAGCTTCTTCCTCTGGCTG CAGAGGATGCAAGCTCTGGAGCGGGAGCAGGATGCCCTGTGGCAGGGGCTGGAGCTGCTG GAGCACAGCCAGGCCTGGTATGAGGGCCGTCTGAGGGAGGCCCAGCAACAGCAGCTGCAT CTGGGTGCCCTTGGTGAGAATTTTCTAACAGATTTACAGTCAGAGGCTGGTGGCCCCCAG TTAGCCCAGATTCAAAAGGTGAACATCTGTTTGCAGAATCTGATTCAGGGGAAGTTCTCG CCACATCCCTTGAACAAAGCTAGTTCCTGTGACACCCAGGACTGGGAGGAAACACCAAGG AAGCAGAACTTGTGGCGGCAACAGGAGGGGTCAAGGCAGCAGAAAGAAGTCATTCAGCCA AAGGGAGCGATGGCTCAGCCGGGCTGCCCCAGTGGACAGAGGGGTCCTACCCATGTCTAA GGTCTCCACACCCTTCAGCTGTGCCAGCAAGGCTGAGTCAGAATCCCCAAACATCCTGGT GTAAAGGTTCTTCTCTGCTCCTGAAAACTTCTGCTTTATCTTTTTGGTACTGTACTCACT CTTCCCTATGTGCTGTGCATAAGTGATCTTTCTTTGAACTCCCTCTGAGTAGAAGACATG TTTATTGACATTATCCTTTGACTTTAAATACAAAAATAAAATAGAAGCGTCTCCAGAATT TCAGTTAAAACAATTCTATAAATAATACTTTCTGGTAGGAGGTGGGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 117-258, + strand, RNAz p=0.817273 | |
| 158-258, - strand, RNAz p=0.924308 | |
| 485-597, - strand, RNAz p=0.854591 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 117-258, + strand, RNAz p=0.817273 | |
| 158-258, - strand, RNAz p=0.924308 | |
| 485-597, - strand, RNAz p=0.854591 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002441, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 117-258, gnl|bosTau2|chr23 (23403581-23403722) | |
| 117-258, gnl|canFam2|chr12 (4247609-4248019) | |
| 117-258, gnl|echTel1|scaffold_312250 (42046-41626) | |
| 117-258, gnl|hg17|chr6 (31839147-31839580) | |
| 117-258, gnl|Hg17|chr6 (31839170-31839311) | |
| 117-258, gnl|loxAfr1|scaffold_56064 (5001-4580) | |
| 117-258, gnl|mm7|chr17 (33124705-33124286) | |
| 117-258, gnl|Mm7|chr17 (33124675-33124534) | |
| 117-258, gnl|monDom2|scaffold_42 (17636729-17636317) | |
| 117-258, gnl|oryCun1|scaffold_198577 (133182-133579) | |
| 117-258, gnl|panTro1|chr5 (32242065-32242498) | |
| 117-258, gnl|rheMac2|chr4 (31409154-31409586) | |
| 117-258, gnl|rn3|chr20 (3863197-3863612) | |
| 442-597, gnl|bosTau2|chr23 (23404669-23404824) | |
| 442-597, gnl|canFam2|chr12 (4248622-4248751) | |
| 442-597, gnl|dasNov1|scaffold_120897 (1023-914) | |
| 442-597, gnl|echTel1|scaffold_312250 (39998-39870) | |
| 442-597, gnl|hg17|chr6 (31840172-31840299) | |
| 442-597, gnl|Hg17|chr6 (31840189-31840341) | |
| 442-597, gnl|loxAfr1|scaffold_56064 (4001-3876) | |
| 442-597, gnl|mm7|chr17 (33123573-33123438) | |
| 442-597, gnl|Mm7|chr17 (33123549-33123372) | |
| 442-597, gnl|monDom2|scaffold_42 (17635649-17635509) | |
| 442-597, gnl|oryCun1|scaffold_198577 (134371-134508) | |
| 442-597, gnl|panTro1|chr5 (32243090-32243222) | |
| 442-597, gnl|rheMac2|chr4 (31410177-31410309) | |
| 442-597, gnl|rn3|chr20 (3864148-3864279) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 117-258, gnl|bosTau2|chr23 (23403581-23403722) | |
| 117-258, gnl|canFam2|chr12 (4247609-4248019) | |
| 117-258, gnl|echTel1|scaffold_312250 (42046-41626) | |
| 117-258, gnl|hg17|chr6 (31839147-31839580) | |
| 117-258, gnl|Hg17|chr6 (31839170-31839311) | |
| 117-258, gnl|loxAfr1|scaffold_56064 (5001-4580) | |
| 117-258, gnl|mm7|chr17 (33124705-33124286) | |
| 117-258, gnl|Mm7|chr17 (33124675-33124534) | |
| 117-258, gnl|monDom2|scaffold_42 (17636729-17636317) | |
| 117-258, gnl|oryCun1|scaffold_198577 (133182-133579) | |
| 117-258, gnl|panTro1|chr5 (32242065-32242498) | |
| 117-258, gnl|rheMac2|chr4 (31409154-31409586) | |
| 117-258, gnl|rn3|chr20 (3863197-3863612) | |
| 442-597, gnl|bosTau2|chr23 (23404669-23404824) | |
| 442-597, gnl|canFam2|chr12 (4248622-4248751) | |
| 442-597, gnl|dasNov1|scaffold_120897 (1023-914) | |
| 442-597, gnl|echTel1|scaffold_312250 (39998-39870) | |
| 442-597, gnl|hg17|chr6 (31840172-31840299) | |
| 442-597, gnl|Hg17|chr6 (31840189-31840341) | |
| 442-597, gnl|loxAfr1|scaffold_56064 (4001-3876) | |
| 442-597, gnl|mm7|chr17 (33123573-33123438) | |
| 442-597, gnl|Mm7|chr17 (33123549-33123372) | |
| 442-597, gnl|monDom2|scaffold_42 (17635649-17635509) | |
| 442-597, gnl|oryCun1|scaffold_198577 (134371-134508) | |
| 442-597, gnl|panTro1|chr5 (32243090-32243222) | |
| 442-597, gnl|rheMac2|chr4 (31410177-31410309) | |
| 442-597, gnl|rn3|chr20 (3864148-3864279) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cbe (0.239234) | |
| tes (0.207814) | |
| gul (0.177588) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| pgl (0.118483) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.239234) | |
| tes (0.207814) | |
| gul (0.177588) | |
| fty (0.17584) | |
| rec (0.17307) | |
| eye (0.170503) | |
| cut (0.169924) | |
| pgl (0.118483) |