Ss1.1-Pig3-SRG8003F10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGTGAGCGTCAGGCCAGCGAGCGGCCCGCGCGCCTCCTTTTCGGCGCCCGCCGCCGC CTCCCGGCGTCTCTTCGAGTCCTCGTGCGCCAGGCCCGCGGCGGCCGGGACCCGCGGTCC ACAGCATGTCCTCCTCGGGCCCTGCTGCGGAGGGAGAGGGAACCCCCGCCCAGCCCGCGT CCGAGAAAGAGCCCGAAATGCCCGGCCCGAGAGAGGAAAGTGAAGAGGAGGACGAGGACG ACGAGGAGGAGGAAGAGGAGGAAGAGAAAGAAAAGAGTCTAATCGTGGAAGGCAAGAGGG AAAAGAAAAAAGTAGAGAGGTTGACAATGCAAGTCTCTTCCTTACAAAGAGAGCCATTTA CAATTGCACAGGGGAAGGGACAGAAACTTTGTGAAATTGAAAGGATACACTTTTTTCTAA GTAAGAAGAAAACAGATGAGCTTAGAAATCTACATAAGCTGCTTTATAACAGACCAGGCA CAGTGTCCTCATTAAAGAAGAATGTGGGTCAGTTCAGTGGCTTTCCATTTGAAAAAGGAA GTATCCAGTATAAGAAGAAGGAAGAAATGTTAAAAAAATTTAGAAATGCCATGTTAAAGA GCATCTGCGAGGTTCTTGATTTGGAAAGATCAGGTGTAAATAGTGAACTGGTGAAAAGGA TCTTGAATTTCTTAATGCATCCAAAGCCTTCTGGCAAACCATTGCCAAAATCTAAAAAAA CCTCTAGCAAAGGCAACAAAAAAGAACGGAATAGTTCTGGAATGGCCAGGAAAGCTAAGC GAACCAAATGTCCTGAAATTCTTTCGGATGAATCCAGCAGCGATGAAGACGAGAAGAAAA ATAAGGAAGAGTCTTCAGATGAGGAAGATAAAGAAAGTGAAGAGGAGCCACCAAAAAAGA CAGCCAAAAAAGAAAAACCCAAACAGAAAGCCACTTCTAAAAGTAAAAAATCTGTAAAAA GTGCTAATGTTAAAAAGGCAGATAGCAGCACCACCAAGAAGAATCAAAACAGTTCCAAAA AAGAAAGTGAATCTGAAGATAGTTCAGATGATGAACCTCTCATTAAAAAGTTGAAGAAAC CTCCTACAGATGAAGAGTTAAAGGAAACAGTAAAGAAGTTATTGGCCAGCGCTAACTTGG AGGAAGTCACAATGAAGCAGATTTGCAAAGAGGTATATGAAAGTTACCCTGCTTATGACT TAACTGAAAGAAAGGAGTTCATAAAAACAACTGTTAAAGAGCTGATTTCTTGAGAAAGAG GACAAAGACAGTTGACTTGTAACCATGGATTTAAAGATCTGATTTAAACCATTATACCAG CAAAGAGAATGTATTTCCTTTTCTAAATCCTTGCAAGCGTTGTGTTGGTAGAACTTCCTG CTGACCTTTTAATCTTGAGTGTTACATAATCTGAGTTGGCTGTTTTAAATTGCATTTCTA TGCAGTTTTTAGTTTAAATTTTTGCATGGCAGTAAGTGTCCGTTGCTTTTATAGTTGTAT TTTGTACATTGGATTTCTTTATATAAGGTTATAGATTCTTGAACTGTAGTTTTTAGTGTG TGCTCAATATTAGCTTAAGACATACTTTTAATCAAGTAGAACAGAAACTATTATAACTGG CATTTATACATGCAGAGACTATTGCAGTATTTAGTATATGAAATATTTTGAATACACATC TGTCAGTGTGAACACTCAGTGGCAGTGTGTTCATCATATTAAAAATACACAAGCTTCAGC TGTCCAGATGACTGAACCGGAACTTTCTCCTGCATGTGTATATATGTCAAATTGTCAGCA TGACAAGAGTGACAGATGTTATTTTTGTATTTTTAAAAACAAATTTGTTGTATATAAAGT TTTTTTATTTCTTTTGTGCAGATCAATTTTTAAATTCATATAAGTAGGTATCTTTACAGT TAAAAACTATGAAATGTCAGTGTTCAGCCAGATGGTATGTCGGAGCAGAGAAAGTCAGAA TTCAGTGAAGAAATCACTGAAGGAACAGAGAGTTCTCTGTTTTGCCTGGGAAGTGTCATC TATTTGTAGTTTTAGTGTTAACTCTGCGACAGTGTGTGTAGATAGATACATTTTATATTA AGGATAGACCAAAATCAACACGTTGAAACTTCAAAAATTTGGTAAAGATTGGGGTTAAGT ACAAGCACATTTGGCTTATAATAATGAATTGATTTTTATTGACTGCTTTTGCCCATATAA AATCCTGCTAGAGGAAATCTGGCCACCTTATAATTATGGAAAAGTCCCCATTGTAGTGCC AGAAGATGATAATATGTAGATAATGTGTAGATGTGGGTACCTGACAAAGTATTTCTCAAA AGTGATAACAGGATTATTTTTTTAAAAATTTAATGTATTCGTGGAATCAGGGGTATTAGA CTTTAAATTTTGGCCAATCAGGATTCTAAATGATCAACATATGGACGGACCACTCCTGAA TGAGACTAATTTTGTCTTTTAAATTTGACTGTCTTAATCAGTTTATTAAATCTCTGAATT TTAAAATAAAACATGCTGCTTATGCAAGAATTAGGCCTTTGATAAACTATTTGAGTGTTT ATCTTTGCATCACAGAACAGAAATATATAAAAATGATGTTGACTGTTAACAGGTATTTTC ACAGGTTTGACTTGTTTCTTGATAAAGTTATTAAGACACTAGAGACAAGCTATGCTAAAT ACAAATGAATGGAATAAACATCTAATGAGACTTAAGAATTGGCCTTTGGTTTTAAATATT TAATTTGTTCCTAGAAACCTTGTCAATAAAAATAATAACTAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGTGAGCGTCAGGCCAGCGAGCGGCCCGCGCGCCTCCTTTTCGGCGCCCGCCGCCGC CTCCCGGCGTCTCTTCGAGTCCTCGTGCGCCAGGCCCGCGGCGGCCGGGACCCGCGGTCC ACAGCATGTCCTCCTCGGGCCCTGCTGCGGAGGGAGAGGGAACCCCCGCCCAGCCCGCGT CCGAGAAAGAGCCCGAAATGCCCGGCCCGAGAGAGGAAAGTGAAGAGGAGGACGAGGACG ACGAGGAGGAGGAAGAGGAGGAAGAGAAAGAAAAGAGTCTAATCGTGGAAGGCAAGAGGG AAAAGAAAAAAGTAGAGAGGTTGACAATGCAAGTCTCTTCCTTACAAAGAGAGCCATTTA CAATTGCACAGGGGAAGGGACAGAAACTTTGTGAAATTGAAAGGATACACTTTTTTCTAA GTAAGAAGAAAACAGATGAGCTTAGAAATCTACATAAGCTGCTTTATAACAGACCAGGCA CAGTGTCCTCATTAAAGAAGAATGTGGGTCAGTTCAGTGGCTTTCCATTTGAAAAAGGAA GTATCCAGTATAAGAAGAAGGAAGAAATGTTAAAAAAATTTAGAAATGCCATGTTAAAGA GCATCTGCGAGGTTCTTGATTTGGAAAGATCAGGTGTAAATAGTGAACTGGTGAAAAGGA TCTTGAATTTCTTAATGCATCCAAAGCCTTCTGGCAAACCATTGCCAAAATCTAAAAAAA CCTCTAGCAAAGGCAACAAAAAAGAACGGAATAGTTCTGGAATGGCCAGGAAAGCTAAGC GAACCAAATGTCCTGAAATTCTTTCGGATGAATCCAGCAGCGATGAAGACGAGAAGAAAA ATAAGGAAGAGTCTTCAGATGAGGAAGATAAAGAAAGTGAAGAGGAGCCACCAAAAAAGA CAGCCAAAAAAGAAAAACCCAAACAGAAAGCCACTTCTAAAAGTAAAAAATCTGTAAAAA GTGCTAATGTTAAAAAGGCAGATAGCAGCACCACCAAGAAGAATCAAAACAGTTCCAAAA AAGAAAGTGAATCTGAAGATAGTTCAGATGATGAACCTCTCATTAAAAAGTTGAAGAAAC CTCCTACAGATGAAGAGTTAAAGGAAACAGTAAAGAAGTTATTGGCCAGCGCTAACTTGG AGGAAGTCACAATGAAGCAGATTTGCAAAGAGGTATATGAAAGTTACCCTGCTTATGACT TAACTGAAAGAAAGGAGTTCATAAAAACAACTGTTAAAGAGCTGATTTCTTGAGAAAGAG GACAAAGACAGTTGACTTGTAACCATGGATTTAAAGATCTGATTTAAACCATTATACCAG CAAAGAGAATGTATTTCCTTTTCTAAATCCTTGCAAGCGTTGTGTTGGTAGAACTTCCTG CTGACCTTTTAATCTTGAGTGTTACATAATCTGAGTTGGCTGTTTTAAATTGCATTTCTA TGCAGTTTTTAGTTTAAATTTTTGCATGGCAGTAAGTGTCCGTTGCTTTTATAGTTGTAT TTTGTACATTGGATTTCTTTATATAAGGTTATAGATTCTTGAACTGTAGTTTTTAGTGTG TGCTCAATATTAGCTTAAGACATACTTTTAATCAAGTAGAACAGAAACTATTATAACTGG CATTTATACATGCAGAGACTATTGCAGTATTTAGTATATGAAATATTTTGAATACACATC TGTCAGTGTGAACACTCAGTGGCAGTGTGTTCATCATATTAAAAATACACAAGCTTCAGC TGTCCAGATGACTGAACCGGAACTTTCTCCTGCATGTGTATATATGTCAAATTGTCAGCA TGACAAGAGTGACAGATGTTATTTTTGTATTTTTAAAAACAAATTTGTTGTATATAAAGT TTTTTTATTTCTTTTGTGCAGATCAATTTTTAAATTCATATAAGTAGGTATCTTTACAGT TAAAAACTATGAAATGTCAGTGTTCAGCCAGATGGTATGTCGGAGCAGAGAAAGTCAGAA TTCAGTGAAGAAATCACTGAAGGAACAGAGAGTTCTCTGTTTTGCCTGGGAAGTGTCATC TATTTGTAGTTTTAGTGTTAACTCTGCGACAGTGTGTGTAGATAGATACATTTTATATTA AGGATAGACCAAAATCAACACGTTGAAACTTCAAAAATTTGGTAAAGATTGGGGTTAAGT ACAAGCACATTTGGCTTATAATAATGAATTGATTTTTATTGACTGCTTTTGCCCATATAA AATCCTGCTAGAGGAAATCTGGCCACCTTATAATTATGGAAAAGTCCCCATTGTAGTGCC AGAAGATGATAATATGTAGATAATGTGTAGATGTGGGTACCTGACAAAGTATTTCTCAAA AGTGATAACAGGATTATTTTTTTAAAAATTTAATGTATTCGTGGAATCAGGGGTATTAGA CTTTAAATTTTGGCCAATCAGGATTCTAAATGATCAACATATGGACGGACCACTCCTGAA TGAGACTAATTTTGTCTTTTAAATTTGACTGTCTTAATCAGTTTATTAAATCTCTGAATT TTAAAATAAAACATGCTGCTTATGCAAGAATTAGGCCTTTGATAAACTATTTGAGTGTTT ATCTTTGCATCACAGAACAGAAATATATAAAAATGATGTTGACTGTTAACAGGTATTTTC ACAGGTTTGACTTGTTTCTTGATAAAGTTATTAAGACACTAGAGACAAGCTATGCTAAAT ACAAATGAATGGAATAAACATCTAATGAGACTTAAGAATTGGCCTTTGGTTTTAAATATT TAATTTGTTCCTAGAAACCTTGTCAATAAAAATAATAACTAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 770-887, + strand, RNAz p=0.654889 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 770-887, + strand, RNAz p=0.654889 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 111-270, gnl|bosTau2|chr27 (105845-106005) | |
| 111-270, gnl|Hg17|chr6 (18372213-18372053) | |
| 111-270, gnl|Mm7|chr13 (46587842-46587670) | |
| 372-484, gnl|bosTau2|chr27 (111390-111502) | |
| 372-484, gnl|canFam2|chr35 (20060143-20060254) | |
| 372-484, gnl|dasNov1|scaffold_81056 (7728-7617) | |
| 372-484, gnl|echTel1|scaffold_255491 (2270-2375) | |
| 372-484, gnl|galGal2|chr2 (60077613-60077502) | |
| 372-484, gnl|hg17|chr6 (18366162-18366273) | |
| 372-484, gnl|Hg17|chr6 (18366273-18366161) | |
| 372-484, gnl|loxAfr1|scaffold_33286 (8512-8401) | |
| 372-484, gnl|mm7|chr13 (46583720-46583831) | |
| 372-484, gnl|Mm7|chr13 (46583831-46583719) | |
| 372-484, gnl|monDom2|scaffold_3 (107380465-107380576) | |
| 372-484, gnl|oryCun1|scaffold_86334 (2529-2418) | |
| 372-484, gnl|panTro1|chr5 (18737846-18737957) | |
| 372-484, gnl|rheMac2|chr4 (18303032-18303143) | |
| 372-484, gnl|rn3|chr17 (23638188-23638077) | |
| 578-698, gnl|bosTau2|chr27 (113829-113949) | |
| 578-698, gnl|canFam2|chr35 (20057708-20057837) | |
| 578-698, gnl|dasNov1|scaffold_105035 (4017-4139) | |
| 578-698, gnl|echTel1|scaffold_290039 (437-308) | |
| 578-698, gnl|galGal2|chr2 (60081801-60081672) | |
| 578-698, gnl|hg17|chr6 (18363933-18364062) | |
| 578-698, gnl|Hg17|chr6 (18364061-18363941) | |
| 578-698, gnl|loxAfr1|scaffold_33286 (10647-10518) | |
| 578-698, gnl|mm7|chr13 (46581433-46581562) | |
| 578-698, gnl|Mm7|chr13 (46581561-46581441) | |
| 578-698, gnl|monDom2|scaffold_3 (107377235-107377360) | |
| 578-698, gnl|oryCun1|scaffold_177910 (36694-36565) | |
| 578-698, gnl|panTro1|chr5 (18735563-18735692) | |
| 578-698, gnl|rheMac2|chr4 (18300979-18301108) | |
| 578-698, gnl|rn3|chr17 (23639787-23639658) | |
| 699-887, gnl|bosTau2|chr27 (120937-121125) | |
| 699-887, gnl|canFam2|chr35 (20052470-20052706) | |
| 699-887, gnl|dasNov1|scaffold_28212 (18190-18436) | |
| 699-887, gnl|echTel1|scaffold_290039 (4199-3964) | |
| 699-887, gnl|galGal2|chr2 (60082726-60082495) | |
| 699-887, gnl|hg17|chr6 (18357850-18358096) | |
| 699-887, gnl|Hg17|chr6 (18358049-18357861) | |
| 699-887, gnl|loxAfr1|scaffold_33286 (15298-15031) | |
| 699-887, gnl|mm7|chr13 (46580242-46580485) | |
| 699-887, gnl|Mm7|chr13 (46580441-46580253) | |
| 699-887, gnl|monDom2|scaffold_3 (107373462-107373724) | |
| 699-887, gnl|oryCun1|scaffold_177910 (46387-46136) | |
| 699-887, gnl|panTro1|chr5 (18729316-18729557) | |
| 699-887, gnl|rheMac2|chr4 (18295210-18295452) | |
| 699-887, gnl|rn3|chr17 (23641375-23641135) | |
| 1022-1196, gnl|bosTau2|chr27 (132425-132599) | |
| 1022-1196, gnl|Hg17|chr6 (18344812-18344637) | |
| 1022-1196, gnl|Mm7|chr13 (46570274-46570094) | |
| 1866-2808, gnl|bosTau2|chr10 (53949898-53950791) | |
| 1866-2808, gnl|Hg17|chr6 (18333310-18332391) | |
| 1866-2808, gnl|Mm7|chr15 (73010828-73011623) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-270, gnl|bosTau2|chr27 (105845-106005) | |
| 111-270, gnl|Hg17|chr6 (18372213-18372053) | |
| 111-270, gnl|Mm7|chr13 (46587842-46587670) | |
| 372-484, gnl|bosTau2|chr27 (111390-111502) | |
| 372-484, gnl|canFam2|chr35 (20060143-20060254) | |
| 372-484, gnl|dasNov1|scaffold_81056 (7728-7617) | |
| 372-484, gnl|echTel1|scaffold_255491 (2270-2375) | |
| 372-484, gnl|galGal2|chr2 (60077613-60077502) | |
| 372-484, gnl|hg17|chr6 (18366162-18366273) | |
| 372-484, gnl|Hg17|chr6 (18366273-18366161) | |
| 372-484, gnl|loxAfr1|scaffold_33286 (8512-8401) | |
| 372-484, gnl|mm7|chr13 (46583720-46583831) | |
| 372-484, gnl|Mm7|chr13 (46583831-46583719) | |
| 372-484, gnl|monDom2|scaffold_3 (107380465-107380576) | |
| 372-484, gnl|oryCun1|scaffold_86334 (2529-2418) | |
| 372-484, gnl|panTro1|chr5 (18737846-18737957) | |
| 372-484, gnl|rheMac2|chr4 (18303032-18303143) | |
| 372-484, gnl|rn3|chr17 (23638188-23638077) | |
| 578-698, gnl|bosTau2|chr27 (113829-113949) | |
| 578-698, gnl|canFam2|chr35 (20057708-20057837) | |
| 578-698, gnl|dasNov1|scaffold_105035 (4017-4139) | |
| 578-698, gnl|echTel1|scaffold_290039 (437-308) | |
| 578-698, gnl|galGal2|chr2 (60081801-60081672) | |
| 578-698, gnl|hg17|chr6 (18363933-18364062) | |
| 578-698, gnl|Hg17|chr6 (18364061-18363941) | |
| 578-698, gnl|loxAfr1|scaffold_33286 (10647-10518) | |
| 578-698, gnl|mm7|chr13 (46581433-46581562) | |
| 578-698, gnl|Mm7|chr13 (46581561-46581441) | |
| 578-698, gnl|monDom2|scaffold_3 (107377235-107377360) | |
| 578-698, gnl|oryCun1|scaffold_177910 (36694-36565) | |
| 578-698, gnl|panTro1|chr5 (18735563-18735692) | |
| 578-698, gnl|rheMac2|chr4 (18300979-18301108) | |
| 578-698, gnl|rn3|chr17 (23639787-23639658) | |
| 699-887, gnl|bosTau2|chr27 (120937-121125) | |
| 699-887, gnl|canFam2|chr35 (20052470-20052706) | |
| 699-887, gnl|dasNov1|scaffold_28212 (18190-18436) | |
| 699-887, gnl|echTel1|scaffold_290039 (4199-3964) | |
| 699-887, gnl|galGal2|chr2 (60082726-60082495) | |
| 699-887, gnl|hg17|chr6 (18357850-18358096) | |
| 699-887, gnl|Hg17|chr6 (18358049-18357861) | |
| 699-887, gnl|loxAfr1|scaffold_33286 (15298-15031) | |
| 699-887, gnl|mm7|chr13 (46580242-46580485) | |
| 699-887, gnl|Mm7|chr13 (46580441-46580253) | |
| 699-887, gnl|monDom2|scaffold_3 (107373462-107373724) | |
| 699-887, gnl|oryCun1|scaffold_177910 (46387-46136) | |
| 699-887, gnl|panTro1|chr5 (18729316-18729557) | |
| 699-887, gnl|rheMac2|chr4 (18295210-18295452) | |
| 699-887, gnl|rn3|chr17 (23641375-23641135) | |
| 1022-1196, gnl|bosTau2|chr27 (132425-132599) | |
| 1022-1196, gnl|Hg17|chr6 (18344812-18344637) | |
| 1022-1196, gnl|Mm7|chr13 (46570274-46570094) | |
| 1866-2808, gnl|bosTau2|chr10 (53949898-53950791) | |
| 1866-2808, gnl|Hg17|chr6 (18333310-18332391) | |
| 1866-2808, gnl|Mm7|chr15 (73010828-73011623) |
| Expressed library(ies): 41 entry(ies) | More info |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
| ret (1.67353) | |
| kid (1.55682) | |
| bfe (1.049) | |
| sag (0.913576) | |
| lyg (0.798616) | |
| tra (0.738552) | |
| lin (0.728014) | |
| vin (0.665115) | |
| thg (0.633955) | |
| liv (0.585137) | |
| spl (0.572738) | |
| cty (0.5204) | |
| fco (0.471624) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| ste (0.405625) | |
| aor (0.390549) | |
| bla (0.373042) | |
| eru (0.360144) | |
| fty (0.351679) | |
| rec (0.346141) | |
| eye (0.341006) | |
| mga (0.32041) | |
| isp (0.300752) | |
| nbm (0.297974) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ova (0.258264) | |
| pan (0.23596) | |
| col (0.195008) | |
| gul (0.177588) | |
| ton (0.1755) | |
| cki (0.165235) | |
| nco (0.161734) | |
| ski (0.146735) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 41 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (1.67353) | |
| kid (1.55682) | |
| bfe (1.049) | |
| sag (0.913576) | |
| lyg (0.798616) | |
| tra (0.738552) | |
| lin (0.728014) | |
| vin (0.665115) | |
| thg (0.633955) | |
| liv (0.585137) | |
| spl (0.572738) | |
| cty (0.5204) | |
| fco (0.471624) | |
| tbr (0.462535) | |
| mgp (0.461361) | |
| ste (0.405625) | |
| aor (0.390549) | |
| bla (0.373042) | |
| eru (0.360144) | |
| fty (0.351679) | |
| rec (0.346141) | |
| eye (0.341006) | |
| mga (0.32041) | |
| isp (0.300752) | |
| nbm (0.297974) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ova (0.258264) | |
| pan (0.23596) | |
| col (0.195008) | |
| gul (0.177588) | |
| ton (0.1755) | |
| cki (0.165235) | |
| nco (0.161734) | |
| ski (0.146735) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| ldo (0.0970026) |