Non-Coding RNA Search

Ss1.1-Pig3-SRG8003F14.5

Sequence:


               
               TAGTTCCGTGCCAATGAAACACTTGATCCAAAAGAAAAAATGGGGGGGGGGGGCAGTGTA
GACTAGGAAAGTGACTTCACAGTTATGGGAAAGGAAGAAAATTGTTAAAGGAAAAGGATC
TCAGTACTGTTGAAACCTGTTTTCAAGAATGTCGTGAAACACTTGTGGCTTTGACTCTGT
TACTGATCTAGATTAATTTCCTTGCATTTGGGAAAGTATCTTTCACATTTCCGGATGGCT
TTGCAAGAAAAACCAAGACACATGGCCGGTACAAGAGCCCACTGATGTTAATCATATGAG
AAAAAGTAACTAATTTATCCAACTTTGGACACCACATGTCTGAGTTATTTGGACTGAAAG
CATACTGAAGATGTCATTTTGTGATTCATCTAAGCCAAGCTGTAGTTATTATCCAAAGGC
TAAATTTTTAGCGAAAGGTAAATTGAGTATTCTTCAGTATTGCAAAAGAATAATCGAGCC
CCCAAAGAAATGTGTATCATGTGTGCTATATCTTAAAGCGTGTTTCCAAGAGCATCTGAG
ATATTGTTTGTACATATATCTTGATCATTTATAACACTACTGTAATCTTGAATTCAAGAA
AATTTACCGTCTTGACCATTTTTAAAAGTCAAAAATTAAGACGTCCTTAATAAAGTTTCA
AACTAAGAATGTCAAAGTACAAAGAAAACTAACATCTTTATATACTAGAGAAATTTTCTG
TTTTACTTGCTCTTTGTTTTTCATGTAACTTTACAGGCAAAAGACTTTGGTTGAACTTCA
TAATATAAGAACTGTTAACTGAAAACTGTCAAGTAAAAGGAGAGCCCTACATCTACAAAA
GACTTTATGAACAATTATGCTGTCAGCCCTTAAGGGTTTTAAACCTGCCCAGAAATTCAC
CTCAGTATCTGAAGTTTTTCCTCTGTCTCCTCCTCTAATTAAGCTTGTTATTGGTTATGC
ACCAGCATTCCAGATAATAAAAATTTCTTGTTCTGTGTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGTTCCGTGCCAATGAAACACTTGATCCAAAAGAAAAAATGGGGGGGGGGGGCAGTGTA
GACTAGGAAAGTGACTTCACAGTTATGGGAAAGGAAGAAAATTGTTAAAGGAAAAGGATC
TCAGTACTGTTGAAACCTGTTTTCAAGAATGTCGTGAAACACTTGTGGCTTTGACTCTGT
TACTGATCTAGATTAATTTCCTTGCATTTGGGAAAGTATCTTTCACATTTCCGGATGGCT
TTGCAAGAAAAACCAAGACACATGGCCGGTACAAGAGCCCACTGATGTTAATCATATGAG
AAAAAGTAACTAATTTATCCAACTTTGGACACCACATGTCTGAGTTATTTGGACTGAAAG
CATACTGAAGATGTCATTTTGTGATTCATCTAAGCCAAGCTGTAGTTATTATCCAAAGGC
TAAATTTTTAGCGAAAGGTAAATTGAGTATTCTTCAGTATTGCAAAAGAATAATCGAGCC
CCCAAAGAAATGTGTATCATGTGTGCTATATCTTAAAGCGTGTTTCCAAGAGCATCTGAG
ATATTGTTTGTACATATATCTTGATCATTTATAACACTACTGTAATCTTGAATTCAAGAA
AATTTACCGTCTTGACCATTTTTAAAAGTCAAAAATTAAGACGTCCTTAATAAAGTTTCA
AACTAAGAATGTCAAAGTACAAAGAAAACTAACATCTTTATATACTAGAGAAATTTTCTG
TTTTACTTGCTCTTTGTTTTTCATGTAACTTTACAGGCAAAAGACTTTGGTTGAACTTCA
TAATATAAGAACTGTTAACTGAAAACTGTCAAGTAAAAGGAGAGCCCTACATCTACAAAA
GACTTTATGAACAATTATGCTGTCAGCCCTTAAGGGTTTTAAACCTGCCCAGAAATTCAC
CTCAGTATCTGAAGTTTTTCCTCTGTCTCCTCCTCTAATTAAGCTTGTTATTGGTTATGC
ACCAGCATTCCAGATAATAAAAATTTCTTGTTCTGTGTAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               366-980, gnl|bosTau2|chr7 (26954461-26955078)
               

               
               366-980, gnl|Hg17|chr15 (46958696-46959277)
               

               
               366-980, gnl|Mm7|chr2 (125414971-125415621)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               366-980, gnl|bosTau2|chr7 (26954461-26955078)
               

               
               366-980, gnl|Hg17|chr15 (46958696-46959277)
               

               
               366-980, gnl|Mm7|chr2 (125414971-125415621)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               fce (1.08637)
               

               
               mgp (0.461361)
               

               
               liv (0.438853)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (1.08637)
               

               
               mgp (0.461361)
               

               
               liv (0.438853)
               

               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               eje (0.0988338)

	366-980, gnl\|bosTau2\|chr7 (26954461-26955078)
	366-980, gnl\|Hg17\|chr15 (46958696-46959277)
	366-980, gnl\|Mm7\|chr2 (125414971-125415621)

	fce (1.08637)
	mgp (0.461361)
	liv (0.438853)
	fbs (0.350693)
	fco (0.314416)
	fat (0.294855)
	spl (0.286369)
	sug (0.254582)
	tra (0.246184)
	jca (0.22792)
	nlu (0.191681)
	nca (0.136874)
	ute (0.132784)
	ret (0.128733)
	pgl (0.118483)
	ebs (0.118301)
	eje (0.0988338)