Non-Coding RNA Search

Ss1.1-Pig3-SRG8003F18.5

Sequence:


               
               AAATGTCTGTTACAGTTAAGTGCCTGCATTAAAAGAAAGCCCACCCCTTATATCCCACTC
ATCTCCTTGCAGTGTTTAATAAATTCATAATAGTATTTGACTTCCCGTCTCTGTATCTTT
TTCCCTCCAGCACTGCAGGAGCGGCTCACTTCTCCATTTGACGTGATGGCTTCAGCCTTT
GATGGCGTCTGCATAGCTCTTGGAAAGGATAAGCAGTAGAGCTTGATGCCTGGAGTCCCA
TGGTCCAGTGTGGACCACTGGGAATATTTTTGGTGGGATTATTTTTTAAATGTTAGGGAA
CTGAGTGGTAGATTTGTGGTAATAATGGATCCAGGGAGCTTGCAGTGGAAAGAGTATGAA
CTTCACCTGAAAAATATTTCTCTGTTCTATAAATCTCTCAGTGACATTTGGATTAATCAA
GCATAATTAAATGTAGTTAGATTTTTGTCAGATTGTAGTTCAAAATAATATTCATCTATG
AAGAGGGTAATATATTCTGTAGAAATTTTATTAAGCACTTTAGCTAAGCAAACACTAAGG
AGAACAAAATCAACCTCAGGAAGGTTAATTACTAAAAAACCCCACAAAGTATAGTAGATT
ATGTAAATCATTTTAATTTTGAATACCATGGCTTGAGCTTTAATTTACATCGAGAGATAT
TTTGGATTTGTTTTTCACATCAAATCTTCCAAAAGTACAAAATTGCACTTGCATTCTTTA
AAATTTTTCATCATTTTAGCAGTCCGTTAAGTTTGCTTAACTTCATGTTATACTTTCCAA
AAGAATTACAGTTGAATTCTTTAAAATGCAACCATTTTGGAATTCCACTGTTTGCTACAA
TTGTGAGAACCATGTTTTTATTTCTGTACCTTTAAAAAATTGATCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTCTGTTACAGTTAAGTGCCTGCATTAAAAGAAAGCCCACCCCTTATATCCCACTC
ATCTCCTTGCAGTGTTTAATAAATTCATAATAGTATTTGACTTCCCGTCTCTGTATCTTT
TTCCCTCCAGCACTGCAGGAGCGGCTCACTTCTCCATTTGACGTGATGGCTTCAGCCTTT
GATGGCGTCTGCATAGCTCTTGGAAAGGATAAGCAGTAGAGCTTGATGCCTGGAGTCCCA
TGGTCCAGTGTGGACCACTGGGAATATTTTTGGTGGGATTATTTTTTAAATGTTAGGGAA
CTGAGTGGTAGATTTGTGGTAATAATGGATCCAGGGAGCTTGCAGTGGAAAGAGTATGAA
CTTCACCTGAAAAATATTTCTCTGTTCTATAAATCTCTCAGTGACATTTGGATTAATCAA
GCATAATTAAATGTAGTTAGATTTTTGTCAGATTGTAGTTCAAAATAATATTCATCTATG
AAGAGGGTAATATATTCTGTAGAAATTTTATTAAGCACTTTAGCTAAGCAAACACTAAGG
AGAACAAAATCAACCTCAGGAAGGTTAATTACTAAAAAACCCCACAAAGTATAGTAGATT
ATGTAAATCATTTTAATTTTGAATACCATGGCTTGAGCTTTAATTTACATCGAGAGATAT
TTTGGATTTGTTTTTCACATCAAATCTTCCAAAAGTACAAAATTGCACTTGCATTCTTTA
AAATTTTTCATCATTTTAGCAGTCCGTTAAGTTTGCTTAACTTCATGTTATACTTTCCAA
AAGAATTACAGTTGAATTCTTTAAAATGCAACCATTTTGGAATTCCACTGTTTGCTACAA
TTGTGAGAACCATGTTTTTATTTCTGTACCTTTAAAAAATTGATCTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               219-324, - strand, RNAz p=0.88929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-324, - strand, RNAz p=0.88929

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-818, gnl|bosTau2|chr9 (34653928-34654768)
               

               
               2-818, gnl|Hg17|chrX (24324660-24325731)
               

               
               2-818, gnl|Mm7|chrX (89145492-89144638)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-818, gnl|bosTau2|chr9 (34653928-34654768)
               

               
               2-818, gnl|Hg17|chrX (24324660-24325731)
               

               
               2-818, gnl|Mm7|chrX (89145492-89144638)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fat (0.294855)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.294855)

	2-818, gnl\|bosTau2\|chr9 (34653928-34654768)
	2-818, gnl\|Hg17\|chrX (24324660-24325731)
	2-818, gnl\|Mm7\|chrX (89145492-89144638)