Non-Coding RNA Search

Ss1.1-Pig3-SRG8003H09.5

Sequence:


               
               CTGCAATATCTCTAGCAATAATCAAATCTTCATTGTCAAATTTCTCTTTCATTAGTTTAC
TCAGGAAATTATTTATTCTTTCTCTCCGTTCCTCCATTAGCCTGTGTGTTTCAGCTTCTT
TTTCTTTCCCCATTTGTGTAAGACGCTTTTTAGCTTTGATAAATTTTCTAATCTTTTCAT
CTTCCTCCTCTTGCTGCTGCCGTTCTATAGCTTTGATGACATTTTTATCATTCAGATGTT
CAAAAAAGAGTCTCCTGCTTTCATTGATCTTTTCTTTTTTCATTCCTAGTTTTTTTTTCA
TTTCTATTTCATATAATAAATTCTGTTGCTTTATTTCCTCAGCATCCTTTTCTTCCTGTT
TTCTCCTCCTTACTTCTTCCTCTTCGTGTTCCTTTATTTGTTTTAAATGATCTTTGGCAA
GAGCCAGTCTATCTCTGCGTTGCTTTTCTGCTTTTTCTTGTTCTTCTTTAAAACCTTTTT
CAATGTTTAGTTTCAACTGTTCCTCCGCTTTTTTATCTGATTTTATTTTACTTTTTTGGA
ATTCAATCTGTGCATCACGTTCCTTCATAACTCTACTAAGAAGAAGTCCTGACTACAAAA
AAAAATTGCAATAGTTTAAGAAAATAAAGTTACATATCTATATGTTAAATATAAATATAT
ATATAAATACAAGAAAACTCAGGTAGTACATGAAAGTTTTTCACTCTTTCTGTCTGGTAA
AATTGATATTGTTTTGCATATTCGATGGCCTTTTTCCTTTCTCCTTGTTTGTATATTGCT
TCTTCCACATCAAGAATTTGTCTTTCTGCCTCTATTTCTTCATCACGTTTCTTTTTGGCT
TCGAGTTTCTGTTTTCTCATCCCTGCGTATGTATTAGTCCAATGCTTTACCACTTCTTGG
GATCGGAAATGCATTTCTTTCTTTGCCTTTCTTTTTGCACGAAGGTGTGCTGCCTCTCTT
GTCAAACTGTCAAGGCCATCTCGAATCCTCTCCCACTCATTGTGTGGAATTATGGTGACC
TGCCGGAGATCTACTTTGTCGGGTAGAAGAGGTGGATAGAGAACTTGATCTTCTTCATAG
TTCTTTATTTCCGTGATTTCCTTCGCCCGTCCACAGCGCCTTCCGAACCGTACCACCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAATATCTCTAGCAATAATCAAATCTTCATTGTCAAATTTCTCTTTCATTAGTTTAC
TCAGGAAATTATTTATTCTTTCTCTCCGTTCCTCCATTAGCCTGTGTGTTTCAGCTTCTT
TTTCTTTCCCCATTTGTGTAAGACGCTTTTTAGCTTTGATAAATTTTCTAATCTTTTCAT
CTTCCTCCTCTTGCTGCTGCCGTTCTATAGCTTTGATGACATTTTTATCATTCAGATGTT
CAAAAAAGAGTCTCCTGCTTTCATTGATCTTTTCTTTTTTCATTCCTAGTTTTTTTTTCA
TTTCTATTTCATATAATAAATTCTGTTGCTTTATTTCCTCAGCATCCTTTTCTTCCTGTT
TTCTCCTCCTTACTTCTTCCTCTTCGTGTTCCTTTATTTGTTTTAAATGATCTTTGGCAA
GAGCCAGTCTATCTCTGCGTTGCTTTTCTGCTTTTTCTTGTTCTTCTTTAAAACCTTTTT
CAATGTTTAGTTTCAACTGTTCCTCCGCTTTTTTATCTGATTTTATTTTACTTTTTTGGA
ATTCAATCTGTGCATCACGTTCCTTCATAACTCTACTAAGAAGAAGTCCTGACTACAAAA
AAAAATTGCAATAGTTTAAGAAAATAAAGTTACATATCTATATGTTAAATATAAATATAT
ATATAAATACAAGAAAACTCAGGTAGTACATGAAAGTTTTTCACTCTTTCTGTCTGGTAA
AATTGATATTGTTTTGCATATTCGATGGCCTTTTTCCTTTCTCCTTGTTTGTATATTGCT
TCTTCCACATCAAGAATTTGTCTTTCTGCCTCTATTTCTTCATCACGTTTCTTTTTGGCT
TCGAGTTTCTGTTTTCTCATCCCTGCGTATGTATTAGTCCAATGCTTTACCACTTCTTGG
GATCGGAAATGCATTTCTTTCTTTGCCTTTCTTTTTGCACGAAGGTGTGCTGCCTCTCTT
GTCAAACTGTCAAGGCCATCTCGAATCCTCTCCCACTCATTGTGTGGAATTATGGTGACC
TGCCGGAGATCTACTTTGTCGGGTAGAAGAGGTGGATAGAGAACTTGATCTTCTTCATAG
TTCTTTATTTCCGTGATTTCCTTCGCCCGTCCACAGCGCCTTCCGAACCGTACCACCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30150130|ref|XP_059384.5|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30150130|ref|XP_059384.5|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-105, gnl|bosTau2|chr2 (18938025-18938129)
               

               
               1-105, gnl|Hg17|chr2 (170332438-170332542)
               

               
               1-105, gnl|Mm7|chr2 (69702573-69702677)
               


               
               241-398, gnl|bosTau2|chr2 (18944280-18944437)
               

               
               241-398, gnl|Hg17|chr2 (170344296-170344453)
               

               
               241-398, gnl|Mm7|chr2 (69708608-69708765)
               


               
               399-863, gnl|bosTau2|chr2 (18948977-18949439)
               

               
               399-863, gnl|Hg17|chr2 (170356593-170357057)
               

               
               399-863, gnl|Mm7|chr2 (69712188-69712667)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-105, gnl|bosTau2|chr2 (18938025-18938129)
               

               
               1-105, gnl|Hg17|chr2 (170332438-170332542)
               

               
               1-105, gnl|Mm7|chr2 (69702573-69702677)
               


               
               241-398, gnl|bosTau2|chr2 (18944280-18944437)
               

               
               241-398, gnl|Hg17|chr2 (170344296-170344453)
               

               
               241-398, gnl|Mm7|chr2 (69708608-69708765)
               


               
               399-863, gnl|bosTau2|chr2 (18948977-18949439)
               

               
               399-863, gnl|Hg17|chr2 (170356593-170357057)
               

               
               399-863, gnl|Mm7|chr2 (69712188-69712667)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	1-105, gnl\|bosTau2\|chr2 (18938025-18938129)
	1-105, gnl\|Hg17\|chr2 (170332438-170332542)
	1-105, gnl\|Mm7\|chr2 (69702573-69702677)

	241-398, gnl\|bosTau2\|chr2 (18944280-18944437)
	241-398, gnl\|Hg17\|chr2 (170344296-170344453)
	241-398, gnl\|Mm7\|chr2 (69708608-69708765)

	399-863, gnl\|bosTau2\|chr2 (18948977-18949439)
	399-863, gnl\|Hg17\|chr2 (170356593-170357057)
	399-863, gnl\|Mm7\|chr2 (69712188-69712667)