Ss1.1-Pig3-SRG8003H13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACACAGTCCTTTCCCAGATAGAGGAGCACAAGGTGTTTGCTAATGAAGTAAATGCTCA TCGAGACCAGATTATTGAGCTGGATCAAACCGGGAATCAGTTAAAGTTCCTTAGCCAAAA ACAGGATGTTGTTCTGATCAAAAATTTGTTGGTTAGCGTCCAGTCTCGATGGGAGAAGGT TGTCCAGCGATCTATTGAAAGAGGGCGCTCCCTGGATGATGCCCGAAAGCGGGCAAAGCA ATTCCATGAAGCTTGGAAAAAACTGATTGACTGGCTAGAAGATGCAGAGAGTCACCTGGA CTCAGAACTGGAGATATCCAACGACCCAGACAAAATCAAACTTCAGCTCTCCAAGCATAA GGAGTTCCAGAAAACTCTTGGTGGCAAGCAGCCTGTGTATGATACCACAATTCGAACGGG CAGAGCCTTGAAAGAAAAGACTTTGCTTCCTGATGACACTCAGAAACTTGACAACTTACT GGGTGAAGTCAGAGACAAATGGGATACTGTTTGTGGCAAGTCTGTGGAGAGGTGGGCATG GTGTCCCCCTCTGTGTGTCTGTATGTTATCTCAGAAGTAACCAAGGATGGTGACAGGATT CTATAAAATGGTCATAAAGCCAGTACACCGCTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACACAGTCCTTTCCCAGATAGAGGAGCACAAGGTGTTTGCTAATGAAGTAAATGCTCA TCGAGACCAGATTATTGAGCTGGATCAAACCGGGAATCAGTTAAAGTTCCTTAGCCAAAA ACAGGATGTTGTTCTGATCAAAAATTTGTTGGTTAGCGTCCAGTCTCGATGGGAGAAGGT TGTCCAGCGATCTATTGAAAGAGGGCGCTCCCTGGATGATGCCCGAAAGCGGGCAAAGCA ATTCCATGAAGCTTGGAAAAAACTGATTGACTGGCTAGAAGATGCAGAGAGTCACCTGGA CTCAGAACTGGAGATATCCAACGACCCAGACAAAATCAAACTTCAGCTCTCCAAGCATAA GGAGTTCCAGAAAACTCTTGGTGGCAAGCAGCCTGTGTATGATACCACAATTCGAACGGG CAGAGCCTTGAAAGAAAAGACTTTGCTTCCTGATGACACTCAGAAACTTGACAACTTACT GGGTGAAGTCAGAGACAAATGGGATACTGTTTGTGGCAAGTCTGTGGAGAGGTGGGCATG GTGTCCCCCTCTGTGTGTCTGTATGTTATCTCAGAAGTAACCAAGGATGGTGACAGGATT CTATAAAATGGTCATAAAGCCAGTACACCGCTAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 72-241, - strand, RNAz p=0.668931 | |
| 130-241, + strand, RNAz p=0.726261 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 72-241, - strand, RNAz p=0.668931 | |
| 130-241, + strand, RNAz p=0.726261 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 33-241, gnl|bosTau2|chr3 (73165480-73165272) | |
| 33-241, gnl|canFam2|chr15 (6396798-6396565) | |
| 33-241, gnl|danRer3|chr19 (67741042-67740826) | |
| 33-241, gnl|dasNov1|scaffold_32624 (9119-8886) | |
| 33-241, gnl|echTel1|scaffold_300812 (68262-68029) | |
| 33-241, gnl|fr1|chrUn (83359867-83359635) | |
| 33-241, gnl|galGal2|chr23 (4853569-4853785) | |
| 33-241, gnl|hg17|chr1 (39582438-39582671) | |
| 33-241, gnl|Hg17|chr1 (39582455-39582663) | |
| 33-241, gnl|loxAfr1|scaffold_6514 (23589-23822) | |
| 33-241, gnl|mm7|chr4 (122823219-122822986) | |
| 33-241, gnl|Mm7|chr4 (122823200-122822992) | |
| 33-241, gnl|monDom2|scaffold_43 (9764719-9764502) | |
| 33-241, gnl|oryCun1|scaffold_199249 (57535-57296) | |
| 33-241, gnl|panTro1|chr1 (40463072-40463305) | |
| 33-241, gnl|rheMac2|chr1 (42319135-42319368) | |
| 33-241, gnl|rn3|chr5 (142694984-142694751) | |
| 33-241, gnl|tetNig1|chrUn_random (3290897-3290665) | |
| 33-241, gnl|xenTro1|scaffold_1043 (85649-85430) | |
| 360-627, gnl|bosTau2|chr3 (73164604-73164336) | |
| 360-627, gnl|canFam2|chr15 (6395933-6395732) | |
| 360-627, gnl|danRer3|chr19 (67740176-67739974) | |
| 360-627, gnl|dasNov1|scaffold_32624 (8030-7826) | |
| 360-627, gnl|echTel1|scaffold_300812 (66628-66424) | |
| 360-627, gnl|fr1|chrUn (83358906-83358706) | |
| 360-627, gnl|galGal2|chr23 (4854428-4854622) | |
| 360-627, gnl|hg17|chr1 (39583339-39583542) | |
| 360-627, gnl|Hg17|chr1 (39583357-39583621) | |
| 360-627, gnl|loxAfr1|scaffold_6514 (24492-24695) | |
| 360-627, gnl|mm7|chr4 (122821889-122821689) | |
| 360-627, gnl|monDom2|scaffold_43 (9760470-9760266) | |
| 360-627, gnl|oryCun1|scaffold_199249 (55613-55410) | |
| 360-627, gnl|panTro1|chr1 (40463973-40464176) | |
| 360-627, gnl|rheMac2|chr1 (42320035-42320238) | |
| 360-627, gnl|rn3|chr5 (142693791-142693591) | |
| 360-627, gnl|tetNig1|chrUn_random (3290214-3290024) | |
| 360-627, gnl|xenTro1|scaffold_1043 (84965-84773) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-241, gnl|bosTau2|chr3 (73165480-73165272) | |
| 33-241, gnl|canFam2|chr15 (6396798-6396565) | |
| 33-241, gnl|danRer3|chr19 (67741042-67740826) | |
| 33-241, gnl|dasNov1|scaffold_32624 (9119-8886) | |
| 33-241, gnl|echTel1|scaffold_300812 (68262-68029) | |
| 33-241, gnl|fr1|chrUn (83359867-83359635) | |
| 33-241, gnl|galGal2|chr23 (4853569-4853785) | |
| 33-241, gnl|hg17|chr1 (39582438-39582671) | |
| 33-241, gnl|Hg17|chr1 (39582455-39582663) | |
| 33-241, gnl|loxAfr1|scaffold_6514 (23589-23822) | |
| 33-241, gnl|mm7|chr4 (122823219-122822986) | |
| 33-241, gnl|Mm7|chr4 (122823200-122822992) | |
| 33-241, gnl|monDom2|scaffold_43 (9764719-9764502) | |
| 33-241, gnl|oryCun1|scaffold_199249 (57535-57296) | |
| 33-241, gnl|panTro1|chr1 (40463072-40463305) | |
| 33-241, gnl|rheMac2|chr1 (42319135-42319368) | |
| 33-241, gnl|rn3|chr5 (142694984-142694751) | |
| 33-241, gnl|tetNig1|chrUn_random (3290897-3290665) | |
| 33-241, gnl|xenTro1|scaffold_1043 (85649-85430) | |
| 360-627, gnl|bosTau2|chr3 (73164604-73164336) | |
| 360-627, gnl|canFam2|chr15 (6395933-6395732) | |
| 360-627, gnl|danRer3|chr19 (67740176-67739974) | |
| 360-627, gnl|dasNov1|scaffold_32624 (8030-7826) | |
| 360-627, gnl|echTel1|scaffold_300812 (66628-66424) | |
| 360-627, gnl|fr1|chrUn (83358906-83358706) | |
| 360-627, gnl|galGal2|chr23 (4854428-4854622) | |
| 360-627, gnl|hg17|chr1 (39583339-39583542) | |
| 360-627, gnl|Hg17|chr1 (39583357-39583621) | |
| 360-627, gnl|loxAfr1|scaffold_6514 (24492-24695) | |
| 360-627, gnl|mm7|chr4 (122821889-122821689) | |
| 360-627, gnl|monDom2|scaffold_43 (9760470-9760266) | |
| 360-627, gnl|oryCun1|scaffold_199249 (55613-55410) | |
| 360-627, gnl|panTro1|chr1 (40463973-40464176) | |
| 360-627, gnl|rheMac2|chr1 (42320035-42320238) | |
| 360-627, gnl|rn3|chr5 (142693791-142693591) | |
| 360-627, gnl|tetNig1|chrUn_random (3290214-3290024) | |
| 360-627, gnl|xenTro1|scaffold_1043 (84965-84773) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |