Ss1.1-Pig3-SRG8003I07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCCAACATGTTTACAATCAACAATGAGACTGGTGACATTATCACAGTGGCCGCCGGAC TTGATAGAGAAAAAGTGCAGCAGTATACGTTAATAATTCAAGCCACAGATATGGAAGGCA ATCCCACGTATGGCCTTTCCAACACAGCCACGGCTGTCATCACGGTGACAGATGTCAATG ACAATCCTCCAGAGTTTACTGCCATGACATTCTACGGCGAGGTCCCTGAAAACAGGGTGG ATGTCATAGTAGCTAATCTGACAGTGACAGATAAGGACCAGCCCCATACACCGGCCTGGA ACGCGGTCTACAGAATCAGCGGTGGGGATCCCACTGGCCGGTTTGCCATTCAGACCGACC CCAACAGCAACGACGGCTTAGTCACCGTAGTAAAACCAATCGACTTTGAAACAAATAGGA TGTTTGTCCTTACTGTTGCTGCAGAAAATCAAGTGCCATTAGCCAAGGGTATTCAGCACC CACCTCAGTCAACTGCAACTGTGTCTGTCACAGTTATTGATGTGAATGAAAACCCTTATT TTGCCCCAAATCCTAAGATCATCCGCCAAGAAGAAGGCCTTCACACTGGTACCATGTTAA CAACGTTCACTGCTCAGGACCCAGATCGATATATGCAGCAAAATATTAAGTACACAAAAT TATCCGATCCAGCCAACTGGCTAAAAATAGATCCTGTGAATGGACAGATAACTACCATTG CCGTTTTGGACAGAGAATCACCAAATGTGAAAAACAATATATATAATGCTACTTTCCTTG CTTCTGACAATGGAATTCCTCCTATGAGTGGAACAGGAACCCTGCAGATCTATTTACTTG ATATTAACGACAATGCCCCGCAAGTGTTACCTCAGGAGGCGGAGACTTGTGAAACTCCGG ACCCCAATTCAATTAACATTACAGCACTTGACTATGACATTGATCCAAATGCTGGGCCAT TTGCTTTTGATCTTCCTTTGTCTCCAGTGACTATTAAGAGAAATTGGACCATCACTCGAC TTAATGGTGATTTTGCTCAGCTTAATTTAAAGATAAAATTTCTTGAAGCCGGGATCTATG AAGTTCCAATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCCAACATGTTTACAATCAACAATGAGACTGGTGACATTATCACAGTGGCCGCCGGAC TTGATAGAGAAAAAGTGCAGCAGTATACGTTAATAATTCAAGCCACAGATATGGAAGGCA ATCCCACGTATGGCCTTTCCAACACAGCCACGGCTGTCATCACGGTGACAGATGTCAATG ACAATCCTCCAGAGTTTACTGCCATGACATTCTACGGCGAGGTCCCTGAAAACAGGGTGG ATGTCATAGTAGCTAATCTGACAGTGACAGATAAGGACCAGCCCCATACACCGGCCTGGA ACGCGGTCTACAGAATCAGCGGTGGGGATCCCACTGGCCGGTTTGCCATTCAGACCGACC CCAACAGCAACGACGGCTTAGTCACCGTAGTAAAACCAATCGACTTTGAAACAAATAGGA TGTTTGTCCTTACTGTTGCTGCAGAAAATCAAGTGCCATTAGCCAAGGGTATTCAGCACC CACCTCAGTCAACTGCAACTGTGTCTGTCACAGTTATTGATGTGAATGAAAACCCTTATT TTGCCCCAAATCCTAAGATCATCCGCCAAGAAGAAGGCCTTCACACTGGTACCATGTTAA CAACGTTCACTGCTCAGGACCCAGATCGATATATGCAGCAAAATATTAAGTACACAAAAT TATCCGATCCAGCCAACTGGCTAAAAATAGATCCTGTGAATGGACAGATAACTACCATTG CCGTTTTGGACAGAGAATCACCAAATGTGAAAAACAATATATATAATGCTACTTTCCTTG CTTCTGACAATGGAATTCCTCCTATGAGTGGAACAGGAACCCTGCAGATCTATTTACTTG ATATTAACGACAATGCCCCGCAAGTGTTACCTCAGGAGGCGGAGACTTGTGAAACTCCGG ACCCCAATTCAATTAACATTACAGCACTTGACTATGACATTGATCCAAATGCTGGGCCAT TTGCTTTTGATCTTCCTTTGTCTCCAGTGACTATTAAGAGAAATTGGACCATCACTCGAC TTAATGGTGATTTTGCTCAGCTTAATTTAAAGATAAAATTTCTTGAAGCCGGGATCTATG AAGTTCCAATCA |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 72-208, gnl|bosTau2|chr24 (20833116-20832980) | |
| 72-208, gnl|canFam2|chr7 (63911260-63911075) | |
| 72-208, gnl|danRer3|chr15 (29396798-29396965) | |
| 72-208, gnl|dasNov1|scaffold_261 (82965-83144) | |
| 72-208, gnl|echTel1|scaffold_316847 (135420-135608) | |
| 72-208, gnl|fr1|chrUn (258007628-258007820) | |
| 72-208, gnl|galGal2|chr2 (104002675-104002844) | |
| 72-208, gnl|hg17|chr18 (23827438-23827623) | |
| 72-208, gnl|Hg17|chr18 (23827599-23827463) | |
| 72-208, gnl|loxAfr1|scaffold_17202 (4349-4168) | |
| 72-208, gnl|mm7|chr18 (16993326-16993511) | |
| 72-208, gnl|Mm7|chr18 (16993487-16993351) | |
| 72-208, gnl|monDom2|scaffold_21 (44812738-44812928) | |
| 72-208, gnl|oryCun1|scaffold_180080 (51767-51953) | |
| 72-208, gnl|panTro1|chr17 (19760931-19761116) | |
| 72-208, gnl|rheMac2|chr18 (20998801-20998983) | |
| 72-208, gnl|rn3|chr18 (8092170-8092355) | |
| 72-208, gnl|tetNig1|chr15 (6803346-6803517) | |
| 72-208, gnl|xenTro1|scaffold_102 (696221-696391) | |
| 210-395, gnl|bosTau2|chr24 (20832282-20832097) | |
| 210-395, gnl|canFam2|chr7 (63912095-63911960) | |
| 210-395, gnl|danRer3|chr15 (29396551-29396686) | |
| 210-395, gnl|dasNov1|scaffold_261 (82170-82305) | |
| 210-395, gnl|echTel1|scaffold_316847 (134587-134722) | |
| 210-395, gnl|fr1|chrUn (258007048-258007183) | |
| 210-395, gnl|galGal2|chr2 (104002123-104002258) | |
| 210-395, gnl|hg17|chr18 (23826615-23826750) | |
| 210-395, gnl|Hg17|chr18 (23826802-23826617) | |
| 210-395, gnl|loxAfr1|scaffold_33706 (44590-44725) | |
| 210-395, gnl|mm7|chr18 (16992544-16992679) | |
| 210-395, gnl|Mm7|chr18 (16992731-16992546) | |
| 210-395, gnl|monDom2|scaffold_21 (44811967-44812102) | |
| 210-395, gnl|oryCun1|scaffold_180080 (50953-51088) | |
| 210-395, gnl|panTro1|chr17 (19760108-19760243) | |
| 210-395, gnl|rheMac2|chr18 (20997978-20998113) | |
| 210-395, gnl|rn3|chr18 (8091301-8091436) | |
| 210-395, gnl|tetNig1|chr15 (6802724-6802859) | |
| 210-395, gnl|xenTro1|scaffold_102 (688589-688724) | |
| 396-652, gnl|bosTau2|chr24 (20829574-20829318) | |
| 396-652, gnl|Hg17|chr18 (23824312-23824056) | |
| 396-652, gnl|Mm7|chr18 (16990054-16989798) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-208, gnl|bosTau2|chr24 (20833116-20832980) | |
| 72-208, gnl|canFam2|chr7 (63911260-63911075) | |
| 72-208, gnl|danRer3|chr15 (29396798-29396965) | |
| 72-208, gnl|dasNov1|scaffold_261 (82965-83144) | |
| 72-208, gnl|echTel1|scaffold_316847 (135420-135608) | |
| 72-208, gnl|fr1|chrUn (258007628-258007820) | |
| 72-208, gnl|galGal2|chr2 (104002675-104002844) | |
| 72-208, gnl|hg17|chr18 (23827438-23827623) | |
| 72-208, gnl|Hg17|chr18 (23827599-23827463) | |
| 72-208, gnl|loxAfr1|scaffold_17202 (4349-4168) | |
| 72-208, gnl|mm7|chr18 (16993326-16993511) | |
| 72-208, gnl|Mm7|chr18 (16993487-16993351) | |
| 72-208, gnl|monDom2|scaffold_21 (44812738-44812928) | |
| 72-208, gnl|oryCun1|scaffold_180080 (51767-51953) | |
| 72-208, gnl|panTro1|chr17 (19760931-19761116) | |
| 72-208, gnl|rheMac2|chr18 (20998801-20998983) | |
| 72-208, gnl|rn3|chr18 (8092170-8092355) | |
| 72-208, gnl|tetNig1|chr15 (6803346-6803517) | |
| 72-208, gnl|xenTro1|scaffold_102 (696221-696391) | |
| 210-395, gnl|bosTau2|chr24 (20832282-20832097) | |
| 210-395, gnl|canFam2|chr7 (63912095-63911960) | |
| 210-395, gnl|danRer3|chr15 (29396551-29396686) | |
| 210-395, gnl|dasNov1|scaffold_261 (82170-82305) | |
| 210-395, gnl|echTel1|scaffold_316847 (134587-134722) | |
| 210-395, gnl|fr1|chrUn (258007048-258007183) | |
| 210-395, gnl|galGal2|chr2 (104002123-104002258) | |
| 210-395, gnl|hg17|chr18 (23826615-23826750) | |
| 210-395, gnl|Hg17|chr18 (23826802-23826617) | |
| 210-395, gnl|loxAfr1|scaffold_33706 (44590-44725) | |
| 210-395, gnl|mm7|chr18 (16992544-16992679) | |
| 210-395, gnl|Mm7|chr18 (16992731-16992546) | |
| 210-395, gnl|monDom2|scaffold_21 (44811967-44812102) | |
| 210-395, gnl|oryCun1|scaffold_180080 (50953-51088) | |
| 210-395, gnl|panTro1|chr17 (19760108-19760243) | |
| 210-395, gnl|rheMac2|chr18 (20997978-20998113) | |
| 210-395, gnl|rn3|chr18 (8091301-8091436) | |
| 210-395, gnl|tetNig1|chr15 (6802724-6802859) | |
| 210-395, gnl|xenTro1|scaffold_102 (688589-688724) | |
| 396-652, gnl|bosTau2|chr24 (20829574-20829318) | |
| 396-652, gnl|Hg17|chr18 (23824312-23824056) | |
| 396-652, gnl|Mm7|chr18 (16990054-16989798) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.118301) |