Non-Coding RNA Search

Ss1.1-Pig3-SRG8003J03.3

Sequence:


               
               GCCTGTCGTCCCGCCTCAGCGGCACCCTGAGCTTCACCAGCGCCGAGGACGACGAGGACG
AGGACGAAGAGGACGACGAGGAGGCCGGCTCCGACCCGCTGGCCTCCGGGGACCGGGCGG
CGGGAGAAGACACAGGCCCATCCTGTTCTCATGCAGACCGGAGTCCCCCACCTGATGGGC
AGCGAGGCAGTCAGCTCCTGACACGGCAGTTGCAAGATTTTTGGAAGAAGTCCCGGAACA
CCCTGGTACCCCAGCGGCTCCTCTTTGAGGTGACCAGCGCCAACGTGGTCAAAGACCCAC
CCTCCAAGTACGTGCTCTACACCCTCGCCGTGATGGGCCCAGGGCCGCCAGATCGCCAGC
CAGCCCAGATCTCCCGCCGCTACTCGGACTTTGAGCGGTTGCACCGAAACCTGCAGCGGC
AGTTCCGGGGCCCCATGGCTGCCATCTCCTTCCCCCGAAAGCGCCTGCGCCGGAATTTTA
CTGCAGAGACCATCGCCCGCCGCAGCCGGGCTTTCGAGCAGTTTCTGGGCCACCTCCAGG
CAGTGCATGAGCTGCGCCAAGCCCCAGACCTGCAGGACTTCTTCGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGTCGTCCCGCCTCAGCGGCACCCTGAGCTTCACCAGCGCCGAGGACGACGAGGACG
AGGACGAAGAGGACGACGAGGAGGCCGGCTCCGACCCGCTGGCCTCCGGGGACCGGGCGG
CGGGAGAAGACACAGGCCCATCCTGTTCTCATGCAGACCGGAGTCCCCCACCTGATGGGC
AGCGAGGCAGTCAGCTCCTGACACGGCAGTTGCAAGATTTTTGGAAGAAGTCCCGGAACA
CCCTGGTACCCCAGCGGCTCCTCTTTGAGGTGACCAGCGCCAACGTGGTCAAAGACCCAC
CCTCCAAGTACGTGCTCTACACCCTCGCCGTGATGGGCCCAGGGCCGCCAGATCGCCAGC
CAGCCCAGATCTCCCGCCGCTACTCGGACTTTGAGCGGTTGCACCGAAACCTGCAGCGGC
AGTTCCGGGGCCCCATGGCTGCCATCTCCTTCCCCCGAAAGCGCCTGCGCCGGAATTTTA
CTGCAGAGACCATCGCCCGCCGCAGCCGGGCTTTCGAGCAGTTTCTGGGCCACCTCCAGG
CAGTGCATGAGCTGCGCCAAGCCCCAGACCTGCAGGACTTCTTCGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56001068|emb|CAI20244.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56001068|emb|CAI20244.1|

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               133-314, gnl|bosTau2|chr13 (54444128-54444309)
               

               
               133-314, gnl|canFam2|chr24 (36120821-36121027)
               

               
               133-314, gnl|dasNov1|scaffold_82 (52996-53200)
               

               
               133-314, gnl|echTel1|scaffold_199861 (9921-10100)
               

               
               133-314, gnl|hg17|chr20 (43896904-43897105)
               

               
               133-314, gnl|Hg17|chr20 (43896970-43897162)
               

               
               133-314, gnl|mm7|chr2 (164527255-164527452)
               

               
               133-314, gnl|Mm7|chr2 (164527324-164527509)
               

               
               133-314, gnl|monDom2|scaffold_35 (25177123-25177304)
               

               
               133-314, gnl|oryCun1|scaffold_200647 (19771-19587)
               

               
               133-314, gnl|panTro1|chr21 (46419361-46419562)
               

               
               133-314, gnl|rheMac2|chr10 (18663296-18663095)
               

               
               133-314, gnl|rn3|chr3 (155725990-155726190)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               133-314, gnl|bosTau2|chr13 (54444128-54444309)
               

               
               133-314, gnl|canFam2|chr24 (36120821-36121027)
               

               
               133-314, gnl|dasNov1|scaffold_82 (52996-53200)
               

               
               133-314, gnl|echTel1|scaffold_199861 (9921-10100)
               

               
               133-314, gnl|hg17|chr20 (43896904-43897105)
               

               
               133-314, gnl|Hg17|chr20 (43896970-43897162)
               

               
               133-314, gnl|mm7|chr2 (164527255-164527452)
               

               
               133-314, gnl|Mm7|chr2 (164527324-164527509)
               

               
               133-314, gnl|monDom2|scaffold_35 (25177123-25177304)
               

               
               133-314, gnl|oryCun1|scaffold_200647 (19771-19587)
               

               
               133-314, gnl|panTro1|chr21 (46419361-46419562)
               

               
               133-314, gnl|rheMac2|chr10 (18663296-18663095)
               

               
               133-314, gnl|rn3|chr3 (155725990-155726190)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	133-314, gnl\|bosTau2\|chr13 (54444128-54444309)
	133-314, gnl\|canFam2\|chr24 (36120821-36121027)
	133-314, gnl\|dasNov1\|scaffold_82 (52996-53200)
	133-314, gnl\|echTel1\|scaffold_199861 (9921-10100)
	133-314, gnl\|hg17\|chr20 (43896904-43897105)
	133-314, gnl\|Hg17\|chr20 (43896970-43897162)
	133-314, gnl\|mm7\|chr2 (164527255-164527452)
	133-314, gnl\|Mm7\|chr2 (164527324-164527509)
	133-314, gnl\|monDom2\|scaffold_35 (25177123-25177304)
	133-314, gnl\|oryCun1\|scaffold_200647 (19771-19587)
	133-314, gnl\|panTro1\|chr21 (46419361-46419562)
	133-314, gnl\|rheMac2\|chr10 (18663296-18663095)
	133-314, gnl\|rn3\|chr3 (155725990-155726190)