Non-Coding RNA Search

Ss1.1-Pig3-SRG8003J24.3

Sequence:


               
               CAGGCTCGGGGTCGAATCGGAGCTGTTGCCACCAGCCCATGCCAGAGCCACAGCAACCCG
GGATCCGAGCCGCTTCGGCAACCTACACCACAGCTCACGGCAACGCCGGGATCCTTCGCC
CACTGAGCAAGGCCAGGGATCGAACCCGAAACCTCATGGTTCCTAGTCGGACTCGTTAAC
CGCTGCACCACGACGGGAACTCCAGGGACGAGTACTCTTATTCATCCCATGCTGGGTTAA
TGTTCGTGTGTTGTCATGGCTGGAAGGCGGATACGAGGGCTGCCTGTCAGAGCCGCCTCG
GCTGCTGGAGGAGTGTGTACCGCGTTGTTCCAGGAACAGTGTAGGCAAACACACCTGTCC
TGGGAGCAGAGACCACACTGGAGCGAGAGGCGAGTCCAAACCTTGTCTCTGCTGTGCGGA
GAGAGCCGTGCCGGTCTTTGAACGGCCGCTCGGGTGGGGTTGCAGGCTTCGCTGCACCGT
AGTCCTGGGGTTCACTGATGACAAGACACACTTGGTAAGGGCTGGCCTTCTAGCACTTCC
TATTTTCAGCTTTGAAAACATGCGTACAAGGAAAAGCTTACCAAAGCTTTAGTTGATTTT
AGTCTTTCCAAGAACCATAACCTTGCCCATAGTATTTACCTCATGTCGTGTCTGTTTTGC
TGTGGGTGAGCTTTGGAAGATAAATAATGTCTATACATGTTTCAACTGTTTAATGAGTAA
TCAGCTAACTCTGCCAGGGAGTCCCTGTGGAACCATATAAAAATCCTGGCTCTGAGTAAA
CCAGAAGTATTTGCCCACATGGCAAACAATCCACGGTAACTGTAAATGCTTTTTAGTGTT
TAACGTCTGTTCTCATAAGCAGGTGTATTGTGATGAAACGTGTACCAATTCTGTCATCAC
TGTGATCTTTAAAAATCTGCATTTAACTATCTAATTGAGGAACTGAGTTGATTTTTTTAT
TTGCCATAAACCAAGCAAAATTAAATGCAATAATTTCAAGAGATTTATGGCACAGGAGTT
TGAGGTATGGATAAACCTTTGAGATATTTTTTTTATTGCTCTTCAGTAAAGAAAGGCTCA
AGAGAGAAAACACCCAGCTCTCTGGTGTTATCTCAGCGTTGCTACTGCAGAACAGCGACA
ATGCTTGCTTGTGTAAATTTATGGCTTACTGTCAAAGCTTCATTCTTGGCTGCATGTTGA
AAATGTGATTAAAGTTAATAGAGGAGATGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCTCGGGGTCGAATCGGAGCTGTTGCCACCAGCCCATGCCAGAGCCACAGCAACCCG
GGATCCGAGCCGCTTCGGCAACCTACACCACAGCTCACGGCAACGCCGGGATCCTTCGCC
CACTGAGCAAGGCCAGGGATCGAACCCGAAACCTCATGGTTCCTAGTCGGACTCGTTAAC
CGCTGCACCACGACGGGAACTCCAGGGACGAGTACTCTTATTCATCCCATGCTGGGTTAA
TGTTCGTGTGTTGTCATGGCTGGAAGGCGGATACGAGGGCTGCCTGTCAGAGCCGCCTCG
GCTGCTGGAGGAGTGTGTACCGCGTTGTTCCAGGAACAGTGTAGGCAAACACACCTGTCC
TGGGAGCAGAGACCACACTGGAGCGAGAGGCGAGTCCAAACCTTGTCTCTGCTGTGCGGA
GAGAGCCGTGCCGGTCTTTGAACGGCCGCTCGGGTGGGGTTGCAGGCTTCGCTGCACCGT
AGTCCTGGGGTTCACTGATGACAAGACACACTTGGTAAGGGCTGGCCTTCTAGCACTTCC
TATTTTCAGCTTTGAAAACATGCGTACAAGGAAAAGCTTACCAAAGCTTTAGTTGATTTT
AGTCTTTCCAAGAACCATAACCTTGCCCATAGTATTTACCTCATGTCGTGTCTGTTTTGC
TGTGGGTGAGCTTTGGAAGATAAATAATGTCTATACATGTTTCAACTGTTTAATGAGTAA
TCAGCTAACTCTGCCAGGGAGTCCCTGTGGAACCATATAAAAATCCTGGCTCTGAGTAAA
CCAGAAGTATTTGCCCACATGGCAAACAATCCACGGTAACTGTAAATGCTTTTTAGTGTT
TAACGTCTGTTCTCATAAGCAGGTGTATTGTGATGAAACGTGTACCAATTCTGTCATCAC
TGTGATCTTTAAAAATCTGCATTTAACTATCTAATTGAGGAACTGAGTTGATTTTTTTAT
TTGCCATAAACCAAGCAAAATTAAATGCAATAATTTCAAGAGATTTATGGCACAGGAGTT
TGAGGTATGGATAAACCTTTGAGATATTTTTTTTATTGCTCTTCAGTAAAGAAAGGCTCA
AGAGAGAAAACACCCAGCTCTCTGGTGTTATCTCAGCGTTGCTACTGCAGAACAGCGACA
ATGCTTGCTTGTGTAAATTTATGGCTTACTGTCAAAGCTTCATTCTTGGCTGCATGTTGA
AAATGTGATTAAAGTTAATAGAGGAGATGAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               588-823, - strand, RNAz p=0.802847
               

               
               936-1115, + strand, RNAz p=0.959974

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               588-823, - strand, RNAz p=0.802847
               

               
               936-1115, + strand, RNAz p=0.959974

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_201280, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_201280, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               211-1235, gnl|bosTau2|chr23 (39465941-39464918)
               

               
               211-1235, gnl|Hg17|chr6 (7960552-7959210)
               

               
               211-1235, gnl|Mm7|chr13 (38022455-38021591)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-1235, gnl|bosTau2|chr23 (39465941-39464918)
               

               
               211-1235, gnl|Hg17|chr6 (7960552-7959210)
               

               
               211-1235, gnl|Mm7|chr13 (38022455-38021591)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               rec (0.346141)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	588-823, - strand, RNAz p=0.802847
	936-1115, + strand, RNAz p=0.959974

	211-1235, gnl\|bosTau2\|chr23 (39465941-39464918)
	211-1235, gnl\|Hg17\|chr6 (7960552-7959210)
	211-1235, gnl\|Mm7\|chr13 (38022455-38021591)

	rec (0.346141)
	thg (0.253582)
	mgp (0.230681)
	aor (0.195274)
	mgm (0.180343)
	fco (0.157208)
	bfe (0.149858)
	liv (0.146284)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	spc (0.113366)
	eje (0.0988338)