Ss1.1-Pig3-SRG8003K01.3.49
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTCATCGGCCTCATCGCCTCGCTCATCCCCACACCGCGGCTCCACTTCCTCATGACCGG CTACACCCCGCTCACCACGGACCAGTCGGTGGCCAGCGTGAGGAAGACCACGGTCCTGGA CGTCATGAGGCGGCTGCTGCAGCCCAAGAACGTGATGGTGTCCACAGGCCGGGATCGCCA GACCAACCACTGCTACATCGCCATCCTCAACATCATCCAGGGGGAGGTGGACCCCACCCA GGTCCACAAGAGCCTGCAGCGGATCCGGGAACGGAAGCTGGCCAACTTCATCCCCTGGGG CCCAGCCAGCATCCAGGTGGCCCTGTCAAGGAAGTCGCCCTACCTGCCTTCTGCCCACAG GGTCAGCGGGCTCATGATGGCCAACCACACCAGCATCTCCTCCCTCTTTGAAAGTTCCTG CCAGCAGTACGACAAGCTGCGGAAGCGGGAGGCCTTCCTGGAGCAGTTCCGCAAGGAGGA CATCTTCAAGGAGAACTTCGACGAGCTGGACAGGTCTAGGGAGGTTGTGCAGGAGCTCAT TGACGAGTACCACGCAGCCACACGGCCAGACTACATCTCCTGGGGCACCCAGGAGCAGTG ACTTCCTCCCTCCTACACCCCCTGTACAGAAAGCACAGCCCCCATCATGCCTGGTCCCTC TGACCCAAATTTCCTCCATCAACAACCTTTCTAGGTTCTTCTCCAGCTTAGGAGTTCGCC CTCCTTCCTCCCTTCCATGCTCTGACCCTTGATATGCTTTAATAAAGTAATAAAATAGAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTCATCGGCCTCATCGCCTCGCTCATCCCCACACCGCGGCTCCACTTCCTCATGACCGG CTACACCCCGCTCACCACGGACCAGTCGGTGGCCAGCGTGAGGAAGACCACGGTCCTGGA CGTCATGAGGCGGCTGCTGCAGCCCAAGAACGTGATGGTGTCCACAGGCCGGGATCGCCA GACCAACCACTGCTACATCGCCATCCTCAACATCATCCAGGGGGAGGTGGACCCCACCCA GGTCCACAAGAGCCTGCAGCGGATCCGGGAACGGAAGCTGGCCAACTTCATCCCCTGGGG CCCAGCCAGCATCCAGGTGGCCCTGTCAAGGAAGTCGCCCTACCTGCCTTCTGCCCACAG GGTCAGCGGGCTCATGATGGCCAACCACACCAGCATCTCCTCCCTCTTTGAAAGTTCCTG CCAGCAGTACGACAAGCTGCGGAAGCGGGAGGCCTTCCTGGAGCAGTTCCGCAAGGAGGA CATCTTCAAGGAGAACTTCGACGAGCTGGACAGGTCTAGGGAGGTTGTGCAGGAGCTCAT TGACGAGTACCACGCAGCCACACGGCCAGACTACATCTCCTGGGGCACCCAGGAGCAGTG ACTTCCTCCCTCCTACACCCCCTGTACAGAAAGCACAGCCCCCATCATGCCTGGTCCCTC TGACCCAAATTTCCTCCATCAACAACCTTTCTAGGTTCTTCTCCAGCTTAGGAGTTCGCC CTCCTTCCTCCCTTCCATGCTCTGACCCTTGATATGCTTTAATAAAGTAATAAAATAGAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 271-390, - strand, RNAz p=0.949444 | |
| 443-675, - strand, RNAz p=0.892626 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 271-390, - strand, RNAz p=0.949444 | |
| 443-675, - strand, RNAz p=0.892626 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 233-402, gnl|bosTau2|chr19 (39042630-39042460) | |
| 233-402, gnl|canFam2|chr9 (23640186-23639999) | |
| 233-402, gnl|danRer3|chr3 (32969049-32968871) | |
| 233-402, gnl|dasNov1|scaffold_23171 (12500-12338) | |
| 233-402, gnl|echTel1|scaffold_321173 (28826-29006) | |
| 233-402, gnl|fr1|chrUn (22757851-22758033) | |
| 233-402, gnl|galGal2|chr27_random (193781-193604) | |
| 233-402, gnl|hg17|chr17 (38071857-38072035) | |
| 233-402, gnl|Hg17|chr17 (38071857-38072027) | |
| 233-402, gnl|loxAfr1|scaffold_89057 (9038-8860) | |
| 233-402, gnl|mm7|chr11 (101270056-101270234) | |
| 233-402, gnl|Mm7|chr11 (101270056-101270226) | |
| 233-402, gnl|monDom2|scaffold_18 (53148606-53148785) | |
| 233-402, gnl|oryCun1|scaffold_195630 (2680-2856) | |
| 233-402, gnl|panTro1|chr19 (41237176-41237354) | |
| 233-402, gnl|rheMac2|chr16 (52789041-52789219) | |
| 233-402, gnl|rn3|chr10 (90196414-90196592) | |
| 233-402, gnl|tetNig1|chr3 (12397743-12397925) | |
| 233-402, gnl|xenTro1|scaffold_3202 (29532-29700) | |
| 404-782, gnl|bosTau2|chr19 (39042337-39041961) | |
| 404-782, gnl|Hg17|chr17 (38072147-38072533) | |
| 404-782, gnl|Mm7|chr11 (101270444-101270809) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 233-402, gnl|bosTau2|chr19 (39042630-39042460) | |
| 233-402, gnl|canFam2|chr9 (23640186-23639999) | |
| 233-402, gnl|danRer3|chr3 (32969049-32968871) | |
| 233-402, gnl|dasNov1|scaffold_23171 (12500-12338) | |
| 233-402, gnl|echTel1|scaffold_321173 (28826-29006) | |
| 233-402, gnl|fr1|chrUn (22757851-22758033) | |
| 233-402, gnl|galGal2|chr27_random (193781-193604) | |
| 233-402, gnl|hg17|chr17 (38071857-38072035) | |
| 233-402, gnl|Hg17|chr17 (38071857-38072027) | |
| 233-402, gnl|loxAfr1|scaffold_89057 (9038-8860) | |
| 233-402, gnl|mm7|chr11 (101270056-101270234) | |
| 233-402, gnl|Mm7|chr11 (101270056-101270226) | |
| 233-402, gnl|monDom2|scaffold_18 (53148606-53148785) | |
| 233-402, gnl|oryCun1|scaffold_195630 (2680-2856) | |
| 233-402, gnl|panTro1|chr19 (41237176-41237354) | |
| 233-402, gnl|rheMac2|chr16 (52789041-52789219) | |
| 233-402, gnl|rn3|chr10 (90196414-90196592) | |
| 233-402, gnl|tetNig1|chr3 (12397743-12397925) | |
| 233-402, gnl|xenTro1|scaffold_3202 (29532-29700) | |
| 404-782, gnl|bosTau2|chr19 (39042337-39041961) | |
| 404-782, gnl|Hg17|chr17 (38072147-38072533) | |
| 404-782, gnl|Mm7|chr11 (101270444-101270809) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| fcc (0.593354) | |
| fbs (0.350693) | |
| fce (0.271592) | |
| cly (0.241284) | |
| ece (0.229305) | |
| cty (0.20816) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.593354) | |
| fbs (0.350693) | |
| fce (0.271592) | |
| cly (0.241284) | |
| ece (0.229305) | |
| cty (0.20816) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) |