Non-Coding RNA Search

Ss1.1-Pig3-SRG8003K02.3

Sequence:


               
               CTTAATACTTTACTCTTACAAATTAACGATTTCATCAGTGATCTGAAAGGTTAAAAATAA
AAAATAAGAAGACTAACTTTGCAAGCAAATGCATCTGTAGTTGAGATGCTTTGTACCAGG
CTCTCGTGTCTTGGTGTATATCTGTACATGTTATTTGATATTCAGAGAATCTAAAGAGCT
CGTCTACTGTGTTAATGAGATTTAACAGCTTTTGACAGTGGGTTTAATTTGTAAACTGCT
TGAAGACCGTGCGTTCAGGCCCAGGCGCTCGGGCTCCAGGCCTCGGAAGCGGAGCCCGCT
GTCGGGAGACCTGTCCTCACTGCCCAGCTGCGGGGCCAGCTTCCAATAACCGCCTTAGTC
CTCTCCGCGGCGAACACTGTACAAGCTCCTGAGTCCTTGCAGTAGCTGCAGATCTCATAG
TCGCCCGTATCCCTCTCGAGCAGACAAAAGCTGGGTCTCACCCCCCAGCACAAGGGTCTC
CTCCGAGTGTCCGCAGCCATCAGGGAGCAGGAAGCTACACTGTAATCACAGGGCAGGGAG
GGAGGGGAAAATCTTTATTTTGTGCTACTTGGACATTGAGAAATGGCTGCCGCCATCACA
AGCTATGCATTTTGTTCAGTGTTTCCAGGGAGCTTGATGTCTTACTTGGAAAGTGGATGT
GTGTGTGTCTGTCATGAAAACTTACCAGCAGAAATCCTCATTCCTTTGCTACAGATTTAC
CAAAAAATTGTCAAGTCTTTGCAGTGTAGGAGTTTCTTTAAAATGTAGAGTATTTTAGAA
AAAAACGTCAATAAACAGTTGATCTCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAATACTTTACTCTTACAAATTAACGATTTCATCAGTGATCTGAAAGGTTAAAAATAA
AAAATAAGAAGACTAACTTTGCAAGCAAATGCATCTGTAGTTGAGATGCTTTGTACCAGG
CTCTCGTGTCTTGGTGTATATCTGTACATGTTATTTGATATTCAGAGAATCTAAAGAGCT
CGTCTACTGTGTTAATGAGATTTAACAGCTTTTGACAGTGGGTTTAATTTGTAAACTGCT
TGAAGACCGTGCGTTCAGGCCCAGGCGCTCGGGCTCCAGGCCTCGGAAGCGGAGCCCGCT
GTCGGGAGACCTGTCCTCACTGCCCAGCTGCGGGGCCAGCTTCCAATAACCGCCTTAGTC
CTCTCCGCGGCGAACACTGTACAAGCTCCTGAGTCCTTGCAGTAGCTGCAGATCTCATAG
TCGCCCGTATCCCTCTCGAGCAGACAAAAGCTGGGTCTCACCCCCCAGCACAAGGGTCTC
CTCCGAGTGTCCGCAGCCATCAGGGAGCAGGAAGCTACACTGTAATCACAGGGCAGGGAG
GGAGGGGAAAATCTTTATTTTGTGCTACTTGGACATTGAGAAATGGCTGCCGCCATCACA
AGCTATGCATTTTGTTCAGTGTTTCCAGGGAGCTTGATGTCTTACTTGGAAAGTGGATGT
GTGTGTGTCTGTCATGAAAACTTACCAGCAGAAATCCTCATTCCTTTGCTACAGATTTAC
CAAAAAATTGTCAAGTCTTTGCAGTGTAGGAGTTTCTTTAAAATGTAGAGTATTTTAGAA
AAAAACGTCAATAAACAGTTGATCTCAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-196, + strand, RNAz p=0.978667

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-196, + strand, RNAz p=0.978667

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL136845, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL136845, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-677, gnl|bosTau2|chr5 (71537257-71536577)
               

               
               1-677, gnl|Hg17|chr22 (41591113-41590421)
               

               
               1-677, gnl|Mm7|chr15 (83459255-83458610)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-677, gnl|bosTau2|chr5 (71537257-71536577)
               

               
               1-677, gnl|Hg17|chr22 (41591113-41590421)
               

               
               1-677, gnl|Mm7|chr15 (83459255-83458610)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               hea (0.408998)
               

               
               cut (0.339847)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               cut (0.339847)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               clu (0.119646)

	1-677, gnl\|bosTau2\|chr5 (71537257-71536577)
	1-677, gnl\|Hg17\|chr22 (41591113-41590421)
	1-677, gnl\|Mm7\|chr15 (83459255-83458610)

	hea (0.408998)
	cut (0.339847)
	mga (0.32041)
	cte (0.29274)
	cbe (0.239234)
	aor (0.195274)
	col (0.195008)
	sag (0.182715)
	sto (0.179824)
	ill (0.175593)
	fat (0.147427)
	ski (0.146735)
	lnt (0.142308)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	ute (0.132784)
	bla (0.124347)
	clu (0.119646)