Non-Coding RNA Search

Ss1.1-Pig3-SRG8003K21.3

Sequence:


               
               TGGACAGTTTCTTAGAAGAGGGGCTTTGCTGTTTTGGGAATAGAGACACTTGGTAGGGCC
AGGCAGGGATGTCTCGCCAGCCTTCACAGTGGTTGGGTCAGGACTTGGGTTTGGGGGCGT
GGTAGGAAGTGCAAGGGAGGGACCAGGGGGCCTGAGGAAGAAGCAGCCTGGGGAGGCACC
AGTCCTCAGCCTCTCCCTCCTGGCCTCGGCAGGTGATGCTGCACTACCGCTCAGACCTGC
TCCAGATGCTTGACACGCTGGTCTTCTCCAGCCTCCTGCTGTTCGGCTTTGCAGAGCAGA
AGCAGATCCTGGAGGTGGAGCTATACCCGGAATACAGAGAGAACTCGGTAAGCGGGGCAG
GAGGGCCAGGAGCCAGCCCTGCCCACAAGCCCAGAATTTGACCTGAAGAGCTCCTGGCCT
CGGTCAGGAGGGACAGCTCCAGAGGCTGGAAGTGGGCCTCATATCTGGCTGTGAGTGACA
GCAGCAGGATCCCGGGCTGATGCTGCTGCCACCTCCCCCTCCCGGCCCACAGTACGTGCC
GACCACCGGCGCCATTATCGAGATCCACAGCAAGCGCATCCAGCTGTACGGCGCCTACCT
CCGCATCCATGCCCACTTCACTGGGCTCAGGTGAGGAAGCGCTGGAGTGGCCTCCTGGCT
GTCCTCAGGTGAAAAGGATCCCAAGCAGAGGTGGCAGGTTTTACTTAGGCTACAGATTCT
CCATTCTGGCTCCATATCAGCATAGCACCTCCCCGGGGGAGCTTTTCACAAATACCAATG
CATGGGCCCCACCCCAAGACAAGGATTTATTAGGTTCATATCTGGTCTTTTTGAAAGCAC
CCCAGGGAAACGTCATGCGCAGCCAGGGTCAGGACCTGCTGTCCGCAACTGCTGGCTCAG
CGCGTGGGAGGCCGAGGGTGGAGGCCAAGGGAGGAGACCCGTTTTAGCCAAACTCTGATG
CATTGCTCTGGAAGTTATTTCTGAGAAGTGGGGGCGGCTGCTGCTCCCCGATAGCTGCGA
CTCCCTCCCCTGCCCCGCCCCCACTCGCATCCCCAGGTACCTGCTGTACAACTTCCCCAT
GACCTGCGCCTTCGTCGGCGTCGCCAGCAACTTCACCTTCCTCAGTGTCATCGTGCTCTT
CAGCTACATGCAGTGGGTGTGGGGCGGCGTCTGGCCCCGACACCGCCTCTCTTTGCAGGT
CGCAAAGGACCCCCCCTTCCTCACCCCTTCGTGACCCTTCTTTGACTGGGGAGTGGGCAG
GGGTGGGCTTGGGGGCTGGGGTGGAAGGGCCCCGATCCCTGGGAGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACAGTTTCTTAGAAGAGGGGCTTTGCTGTTTTGGGAATAGAGACACTTGGTAGGGCC
AGGCAGGGATGTCTCGCCAGCCTTCACAGTGGTTGGGTCAGGACTTGGGTTTGGGGGCGT
GGTAGGAAGTGCAAGGGAGGGACCAGGGGGCCTGAGGAAGAAGCAGCCTGGGGAGGCACC
AGTCCTCAGCCTCTCCCTCCTGGCCTCGGCAGGTGATGCTGCACTACCGCTCAGACCTGC
TCCAGATGCTTGACACGCTGGTCTTCTCCAGCCTCCTGCTGTTCGGCTTTGCAGAGCAGA
AGCAGATCCTGGAGGTGGAGCTATACCCGGAATACAGAGAGAACTCGGTAAGCGGGGCAG
GAGGGCCAGGAGCCAGCCCTGCCCACAAGCCCAGAATTTGACCTGAAGAGCTCCTGGCCT
CGGTCAGGAGGGACAGCTCCAGAGGCTGGAAGTGGGCCTCATATCTGGCTGTGAGTGACA
GCAGCAGGATCCCGGGCTGATGCTGCTGCCACCTCCCCCTCCCGGCCCACAGTACGTGCC
GACCACCGGCGCCATTATCGAGATCCACAGCAAGCGCATCCAGCTGTACGGCGCCTACCT
CCGCATCCATGCCCACTTCACTGGGCTCAGGTGAGGAAGCGCTGGAGTGGCCTCCTGGCT
GTCCTCAGGTGAAAAGGATCCCAAGCAGAGGTGGCAGGTTTTACTTAGGCTACAGATTCT
CCATTCTGGCTCCATATCAGCATAGCACCTCCCCGGGGGAGCTTTTCACAAATACCAATG
CATGGGCCCCACCCCAAGACAAGGATTTATTAGGTTCATATCTGGTCTTTTTGAAAGCAC
CCCAGGGAAACGTCATGCGCAGCCAGGGTCAGGACCTGCTGTCCGCAACTGCTGGCTCAG
CGCGTGGGAGGCCGAGGGTGGAGGCCAAGGGAGGAGACCCGTTTTAGCCAAACTCTGATG
CATTGCTCTGGAAGTTATTTCTGAGAAGTGGGGGCGGCTGCTGCTCCCCGATAGCTGCGA
CTCCCTCCCCTGCCCCGCCCCCACTCGCATCCCCAGGTACCTGCTGTACAACTTCCCCAT
GACCTGCGCCTTCGTCGGCGTCGCCAGCAACTTCACCTTCCTCAGTGTCATCGTGCTCTT
CAGCTACATGCAGTGGGTGTGGGGCGGCGTCTGGCCCCGACACCGCCTCTCTTTGCAGGT
CGCAAAGGACCCCCCCTTCCTCACCCCTTCGTGACCCTTCTTTGACTGGGGAGTGGGCAG
GGGTGGGCTTGGGGGCTGGGGTGGAAGGGCCCCGATCCCTGGGAGGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               295-406, - strand, RNAz p=0.843927

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-406, - strand, RNAz p=0.843927

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               176-825, gnl|bosTau2|chr29 (32122220-32121561)
               

               
               176-825, gnl|Hg17|chr11 (62216882-62216130)
               

               
               176-825, gnl|Mm7|chr19 (8526318-8526955)
               


               
               827-1308, gnl|bosTau2|chr29 (32121397-32120944)
               

               
               827-1308, gnl|Hg17|chr11 (62215806-62215227)
               

               
               827-1308, gnl|Mm7|chr19 (8527294-8527791)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-825, gnl|bosTau2|chr29 (32122220-32121561)
               

               
               176-825, gnl|Hg17|chr11 (62216882-62216130)
               

               
               176-825, gnl|Mm7|chr19 (8526318-8526955)
               


               
               827-1308, gnl|bosTau2|chr29 (32121397-32120944)
               

               
               827-1308, gnl|Hg17|chr11 (62215806-62215227)
               

               
               827-1308, gnl|Mm7|chr19 (8527294-8527791)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mas (0.210305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)

	176-825, gnl\|bosTau2\|chr29 (32122220-32121561)
	176-825, gnl\|Hg17\|chr11 (62216882-62216130)
	176-825, gnl\|Mm7\|chr19 (8526318-8526955)

	827-1308, gnl\|bosTau2\|chr29 (32121397-32120944)
	827-1308, gnl\|Hg17\|chr11 (62215806-62215227)
	827-1308, gnl\|Mm7\|chr19 (8527294-8527791)