Non-Coding RNA Search

Ss1.1-Pig3-SRG8003L16.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTAATGGCAGCTAAAGGTACATATACAGATTACTGTTAAACT
GCAGTCTTTTAAAAAATATATTTTCTCAGATGTAGAACATGCAGCCTGGTATTTTTAATC
AGATGAAATGCTTACAAAATGGATTTCCTCCTCATTCTGTATTCATGATGATTTTTTTAA
TACCAATTGTGATATTTACAATGTTTGCCAAAGCCTAAAATTTTACAAATACTGGGATTT
TACCAGTGTTTCTTTGATAAATTCTGAATGCAGAATTTGAAATTTTAACATTGGCCTCTA
AGATCTACTTGGAAATATATGTTTGTGTTTCAGAATTTACGTTGAAACATAAGTTCCTTG
GAAAACGAACACAACTTAATAGGTTTTCCATTTTACCAACTGGAATGCTTTTTCTTGTTT
GTTTTTCACTGCACATTCCTCATTTTTCATTGATTGAACCTGCCGATTATTTAATTTTTT
TTATTGTAAAGTAGTTTTTAGTATTTGCTTTTATTTTTTTACTTTGATGCCTTTTCAAAT
TGGCATGTCTCTAAAGTATTTTTCTTCCTTGATTAAAAATGTGTGTATGTGTGTATGTAT
ATACATGTGTGTGTTTTTTACATCATATTAACTTTACCAAGTGAAACCAAGCCATACTGT
TTTTGAGCCAATTCAGAAAATTGCAGTTTTTTAAAGGGTAGGATTGCGGGGTGGTGAGCA
CACGTGAAATGACTTGGTGTATTCTGGATTACGGCAAGAAAACCACCTTAACGCGTTCAT
GGAAAGTTCGTGTTGTCTGAAAAAGCAGGCGGAAAGGAACTGACTGGTAGTAGGTTTTTT
TTTAAAAAAAAAAAAAAAAAAGAGGGACAAAGAGAGTAGTCTTGTCTTAAAGCAGAATGT
CTGGTTGAGTCAGACATTTACGAAAGGAGATGATAAAAGCCAGACTTGAGAGTTTGTAGT
AAGTCGTAGAAGGCTTGGGGGAAGTGAACTGTATTTGCCTTGGTTTACAATACTTGGAAA
TAATGGGGTTGGAAAGAAAACGGCATGTTGAAAATTTGACCATAGCAGATCAATTTGGGC
AGATTTATGCATAAGAGGGAAAAGAGACTAGTGCGTCTTCTACTCTGAAATGTTTCTGTT
CCAGTGAGACCAGCGTCTTTCGGGGGAGCTCTGAAAGCCCTGTGTCAGGGCAGATTTGTA
ACGGTGATCAGTTCAAGTAAATGGTGACTATTATGTGAACTCTATTTGGCCAGTGGAAAT
GAAAATTGGAAAAGACTGTAAATAGTTAAATCCAAATGATTTCTCTGTATAAATGAATTA
TACAATTAAAAAAAAAAGTCACACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTAATGGCAGCTAAAGGTACATATACAGATTACTGTTAAACT
GCAGTCTTTTAAAAAATATATTTTCTCAGATGTAGAACATGCAGCCTGGTATTTTTAATC
AGATGAAATGCTTACAAAATGGATTTCCTCCTCATTCTGTATTCATGATGATTTTTTTAA
TACCAATTGTGATATTTACAATGTTTGCCAAAGCCTAAAATTTTACAAATACTGGGATTT
TACCAGTGTTTCTTTGATAAATTCTGAATGCAGAATTTGAAATTTTAACATTGGCCTCTA
AGATCTACTTGGAAATATATGTTTGTGTTTCAGAATTTACGTTGAAACATAAGTTCCTTG
GAAAACGAACACAACTTAATAGGTTTTCCATTTTACCAACTGGAATGCTTTTTCTTGTTT
GTTTTTCACTGCACATTCCTCATTTTTCATTGATTGAACCTGCCGATTATTTAATTTTTT
TTATTGTAAAGTAGTTTTTAGTATTTGCTTTTATTTTTTTACTTTGATGCCTTTTCAAAT
TGGCATGTCTCTAAAGTATTTTTCTTCCTTGATTAAAAATGTGTGTATGTGTGTATGTAT
ATACATGTGTGTGTTTTTTACATCATATTAACTTTACCAAGTGAAACCAAGCCATACTGT
TTTTGAGCCAATTCAGAAAATTGCAGTTTTTTAAAGGGTAGGATTGCGGGGTGGTGAGCA
CACGTGAAATGACTTGGTGTATTCTGGATTACGGCAAGAAAACCACCTTAACGCGTTCAT
GGAAAGTTCGTGTTGTCTGAAAAAGCAGGCGGAAAGGAACTGACTGGTAGTAGGTTTTTT
TTTAAAAAAAAAAAAAAAAAAGAGGGACAAAGAGAGTAGTCTTGTCTTAAAGCAGAATGT
CTGGTTGAGTCAGACATTTACGAAAGGAGATGATAAAAGCCAGACTTGAGAGTTTGTAGT
AAGTCGTAGAAGGCTTGGGGGAAGTGAACTGTATTTGCCTTGGTTTACAATACTTGGAAA
TAATGGGGTTGGAAAGAAAACGGCATGTTGAAAATTTGACCATAGCAGATCAATTTGGGC
AGATTTATGCATAAGAGGGAAAAGAGACTAGTGCGTCTTCTACTCTGAAATGTTTCTGTT
CCAGTGAGACCAGCGTCTTTCGGGGGAGCTCTGAAAGCCCTGTGTCAGGGCAGATTTGTA
ACGGTGATCAGTTCAAGTAAATGGTGACTATTATGTGAACTCTATTTGGCCAGTGGAAAT
GAAAATTGGAAAAGACTGTAAATAGTTAAATCCAAATGATTTCTCTGTATAAATGAATTA
TACAATTAAAAAAAAAAGTCACACAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               180-299, - strand, RNAz p=0.820564
               

               
               841-991, - strand, RNAz p=0.999937

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-299, - strand, RNAz p=0.820564
               

               
               841-991, - strand, RNAz p=0.999937

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-1344, gnl|bosTau2|chr13 (29038389-29039699)
               

               
               2-1344, gnl|Hg17|chr10 (5489087-5490420)
               

               
               2-1344, gnl|Mm7|chr13 (3768256-3766946)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1344, gnl|bosTau2|chr13 (29038389-29039699)
               

               
               2-1344, gnl|Hg17|chr10 (5489087-5490420)
               

               
               2-1344, gnl|Mm7|chr13 (3768256-3766946)

Expressed library(ies): 41 entry(ies)

More info

Expressed library(ies): 41 entry(ies)

Help | Less info


               
               aor (1.56219)
               

               
               cmu (1.49115)
               

               
               sin (0.874738)
               

               
               cbe (0.717703)
               

               
               rec (0.692281)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               fat (0.442282)
               

               
               ski (0.440205)
               

               
               nca (0.410621)
               

               
               lyg (0.399308)
               

               
               col (0.390016)
               

               
               thg (0.380373)
               

               
               eru (0.360144)
               

               
               gul (0.355177)
               

               
               spc (0.340097)
               

               
               nco (0.323468)
               

               
               eje (0.296501)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 41 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (1.56219)
               

               
               cmu (1.49115)
               

               
               sin (0.874738)
               

               
               cbe (0.717703)
               

               
               rec (0.692281)
               

               
               mga (0.480615)
               

               
               mgp (0.461361)
               

               
               fat (0.442282)
               

               
               ski (0.440205)
               

               
               nca (0.410621)
               

               
               lyg (0.399308)
               

               
               col (0.390016)
               

               
               thg (0.380373)
               

               
               eru (0.360144)
               

               
               gul (0.355177)
               

               
               spc (0.340097)
               

               
               nco (0.323468)
               

               
               eje (0.296501)
               

               
               lin (0.291206)
               

               
               tra (0.246184)
               

               
               cly (0.241284)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	180-299, - strand, RNAz p=0.820564
	841-991, - strand, RNAz p=0.999937

	2-1344, gnl\|bosTau2\|chr13 (29038389-29039699)
	2-1344, gnl\|Hg17\|chr10 (5489087-5490420)
	2-1344, gnl\|Mm7\|chr13 (3768256-3766946)

	aor (1.56219)
	cmu (1.49115)
	sin (0.874738)
	cbe (0.717703)
	rec (0.692281)
	mga (0.480615)
	mgp (0.461361)
	fat (0.442282)
	ski (0.440205)
	nca (0.410621)
	lyg (0.399308)
	col (0.390016)
	thg (0.380373)
	eru (0.360144)
	gul (0.355177)
	spc (0.340097)
	nco (0.323468)
	eje (0.296501)
	lin (0.291206)
	tra (0.246184)
	cly (0.241284)
	hea (0.204499)
	jej (0.197844)
	nlu (0.191681)
	nep (0.183925)
	sto (0.179824)
	mcp (0.170648)
	cut (0.169924)
	nje (0.16592)
	tbr (0.154178)
	liv (0.146284)
	pty (0.142714)
	lnt (0.142308)
	ova (0.129132)
	cbr (0.127975)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	ecc (0.115035)
	cty (0.10408)