Non-Coding RNA Search

Ss1.1-Pig3-SRG8003M02.3

Sequence:


               
               TTTTTTTTTTTTTTTAACTCTCTGGTTCAAAGGTTGCCCACCCGTAGATGAATACTTTAC
CCAGATACACCTGAGAAAAGGATACCATGTTTATAAGCAGACAATAATGTTCCCAGTCCT
TTCTGTTCATGCTGCTTTCTTAATTCTTTTCTCCATTTCATCAAGAGGTTGGACAACTTG
TTTCTAAAGTCAGATTTAAATATCATGGCATCTTCCAATTTTCCACACAGACCTCACCAA
ATTGCCATTGAGTAAGTAAGTAGCATGACCCTAAAGGTATTGCTGGCACCAGGCAGCCGC
ATCGATCTGGCCTCTGAAGAGCCAGTCTTCACACATCTCTGTTCCCCAGCACTCGCCCTC
AACTGAACAGATGGGGAGTGGTCTTGACTGACAAAGACAAACTGGTGAAGAAAGCTACAG
GCTGAGACACTGAGCATCTATTGTCGTGTTTAAGCTTAGCTGGGTCCTTTCGAGTTTGTT
TTACAGCTTACTAGGTTAAGTAGTTTGCACTATTTTTGCAATAAATTCATGGAAAACCTA
ACAGTTACTTGTTTTGTTTCTTATTGTGTGTATATAAACTAATACTAAAAGTTTGGCATA
GTGTTTTTTCACCTCCTTACATAACCCTTAACATGCACAGAATGCTGTAAATCTGATAAA
ATATGATGTGAATGATATTTTATAAAGTTATTTTGTATGGTGTCAATTTTGTTTTGCCTC
ATAGTATGTCAGCAAAAAATAAAATAAAATTCCTCGTATTTACAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTAACTCTCTGGTTCAAAGGTTGCCCACCCGTAGATGAATACTTTAC
CCAGATACACCTGAGAAAAGGATACCATGTTTATAAGCAGACAATAATGTTCCCAGTCCT
TTCTGTTCATGCTGCTTTCTTAATTCTTTTCTCCATTTCATCAAGAGGTTGGACAACTTG
TTTCTAAAGTCAGATTTAAATATCATGGCATCTTCCAATTTTCCACACAGACCTCACCAA
ATTGCCATTGAGTAAGTAAGTAGCATGACCCTAAAGGTATTGCTGGCACCAGGCAGCCGC
ATCGATCTGGCCTCTGAAGAGCCAGTCTTCACACATCTCTGTTCCCCAGCACTCGCCCTC
AACTGAACAGATGGGGAGTGGTCTTGACTGACAAAGACAAACTGGTGAAGAAAGCTACAG
GCTGAGACACTGAGCATCTATTGTCGTGTTTAAGCTTAGCTGGGTCCTTTCGAGTTTGTT
TTACAGCTTACTAGGTTAAGTAGTTTGCACTATTTTTGCAATAAATTCATGGAAAACCTA
ACAGTTACTTGTTTTGTTTCTTATTGTGTGTATATAAACTAATACTAAAAGTTTGGCATA
GTGTTTTTTCACCTCCTTACATAACCCTTAACATGCACAGAATGCTGTAAATCTGATAAA
ATATGATGTGAATGATATTTTATAAAGTTATTTTGTATGGTGTCAATTTTGTTTTGCCTC
ATAGTATGTCAGCAAAAAATAAAATAAAATTCCTCGTATTTACAGCTG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               17-765, gnl|bosTau2|chr12 (42918105-42917377)
               

               
               17-765, gnl|Hg17|chr8 (141600189-141599436)
               

               
               17-765, gnl|Mm7|chr15 (73176311-73175594)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-765, gnl|bosTau2|chr12 (42918105-42917377)
               

               
               17-765, gnl|Hg17|chr8 (141600189-141599436)
               

               
               17-765, gnl|Mm7|chr15 (73176311-73175594)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               thg (0.380373)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               thg (0.380373)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	17-765, gnl\|bosTau2\|chr12 (42918105-42917377)
	17-765, gnl\|Hg17\|chr8 (141600189-141599436)
	17-765, gnl\|Mm7\|chr15 (73176311-73175594)

	amn (0.417711)
	thg (0.380373)
	cmu (0.186393)
	fbs (0.175346)
	isp (0.150376)
	ski (0.146735)
	lnt (0.142308)
	nca (0.136874)
	spc (0.113366)
	nbm (0.0993246)