Non-Coding RNA Search

Ss1.1-Pig3-SRG8003M22.5

Sequence:


               
               TAACAAAATAGACGATACTATTCGTTACCTGTCCTTACATGACAACAAATACATCAGATA
CTTTCCTGGACATAGCAAAAGGGTGGTGGCCTTGTCTATGTCACCTGTGGATGACACTTT
CATATCTGGGTCTCTTGATAAGACCATTCGACTCTGGGATCTCCGGTCTCCTAACTGCCA
GGGTCTCATGCATCTACAAGGCAAGCCAGTTTGTTCTTTTGATCCAGAAGGGTTAATTTT
TGCTGCAGGTGTCAATTCCGAAATGGTCAAACTTTATGATCTTCGCTCTTTTGATAAGGG
GCCATTTGCGACATTTAAAATGCAGTATGATCGGACTTGTGAGTGGACAGGACTTAAGTT
CAGCAATGATGGCAAACTCATTCTCATCTCCACCAATGGCAGCTTCATCCGTCTCATTGA
TGCATTCAAGGGAGTGGTGATGCATACATTTGGGGGTTATGCTAACAGCAAAGCTGTCAC
ACTGGAGGCCTCATTTACTCCAGATTCCCAGTTTATTATGATTGGTTCAGAGGATGGCAA
GATCCATGTCTGGAATGGAGAGAGTGGTATAAAAGTAGCTGTGTTGGATGGCAAACACAC
AGGCCCCATTACCTGTTTGCAGTTCAACCCCAAGTTCATGACCTTTGCCAGCGCATGTTC
CAACATGGCCTTCTGGTTGCCCACCATTGATGACTGACCCTCATGCTACTCGGCTGTTTT
CTGTACAGTGAGGGTGGCCAGCAGGAAGAAACTCAGAGGGGACTAAGATGTAGTGGGATT
GGATCATTTGACTGGGCTGGAGAATATCCTTCCACATGGCCTCCCAAGGATGTGCTGTAC
ATTTACTCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAACAAAATAGACGATACTATTCGTTACCTGTCCTTACATGACAACAAATACATCAGATA
CTTTCCTGGACATAGCAAAAGGGTGGTGGCCTTGTCTATGTCACCTGTGGATGACACTTT
CATATCTGGGTCTCTTGATAAGACCATTCGACTCTGGGATCTCCGGTCTCCTAACTGCCA
GGGTCTCATGCATCTACAAGGCAAGCCAGTTTGTTCTTTTGATCCAGAAGGGTTAATTTT
TGCTGCAGGTGTCAATTCCGAAATGGTCAAACTTTATGATCTTCGCTCTTTTGATAAGGG
GCCATTTGCGACATTTAAAATGCAGTATGATCGGACTTGTGAGTGGACAGGACTTAAGTT
CAGCAATGATGGCAAACTCATTCTCATCTCCACCAATGGCAGCTTCATCCGTCTCATTGA
TGCATTCAAGGGAGTGGTGATGCATACATTTGGGGGTTATGCTAACAGCAAAGCTGTCAC
ACTGGAGGCCTCATTTACTCCAGATTCCCAGTTTATTATGATTGGTTCAGAGGATGGCAA
GATCCATGTCTGGAATGGAGAGAGTGGTATAAAAGTAGCTGTGTTGGATGGCAAACACAC
AGGCCCCATTACCTGTTTGCAGTTCAACCCCAAGTTCATGACCTTTGCCAGCGCATGTTC
CAACATGGCCTTCTGGTTGCCCACCATTGATGACTGACCCTCATGCTACTCGGCTGTTTT
CTGTACAGTGAGGGTGGCCAGCAGGAAGAAACTCAGAGGGGACTAAGATGTAGTGGGATT
GGATCATTTGACTGGGCTGGAGAATATCCTTCCACATGGCCTCCCAAGGATGTGCTGTAC
ATTTACTCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18676851|dbj|BAB85039.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18676851|dbj|BAB85039.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-198, + strand, RNAz p=0.922672

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-198, + strand, RNAz p=0.922672

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr17 (18916488-18917325)
               

               
               1-852, gnl|Hg17|chr3 (96139313-96138463)
               

               
               1-852, gnl|Mm7|chr9 (105906145-105918227)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr17 (18916488-18917325)
               

               
               1-852, gnl|Hg17|chr3 (96139313-96138463)
               

               
               1-852, gnl|Mm7|chr9 (105906145-105918227)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	1-852, gnl\|bosTau2\|chr17 (18916488-18917325)
	1-852, gnl\|Hg17\|chr3 (96139313-96138463)
	1-852, gnl\|Mm7\|chr9 (105906145-105918227)

	fce (0.271592)
	rec (0.17307)
	cje (0.165235)
	csk (0.140746)
	sug (0.127291)
	pgl (0.118483)
	jca (0.11396)