Non-Coding RNA Search

Ss1.1-Pig3-SRG8003O13.3

Sequence:


               
               CCCCAGCTTCACTGGCACATCCAGACCCCCAGGGCACTGTGGAGATTGCCAGTCCCAATG
TGGGTGCCGATGGGCGCGCCCTGCCAGGTGCCCTGGCAGCCAGCGCCCGGCCGCGCTTCC
AGGCCTTTGCCAATGGCAGTCTGCTCATCCCCGACTTTGGCAAGCTGGAGGAGGGCACCT
ACAGCTGCCTGGCCACCAATGAGCTGGGCAGTGCGGAGAGCTCAGTGAACGTGGCACTGG
CCACCCCGGGCGAGGGTGGCGAGGATGCGCTAGGGCGCATGTTCCACGGCAAAGCAGCCG
AGGGGAAGGGCTGCTACACGGTTGACAATGAGGTGCAGCCATCAGGTCCAGAGGACAACG
TTGTCATCATCTACCTCAGCCGCACTGGGGGCCCTGAGGCTGCAGCAACGGGAGAAGGGG
TCTCTGCACAGCAGCCCCCAGGCCTACTCCTGCTGGGCCAGAGCATCCTCCTTCTTGTAC
TCACTTTTTTCTAGCCCCACCTTGACCTGGGCTGGGCTGGAACAGCCCCAAGTCCTCACT
GACTCCTTCCCCTGACTCCGAGGCTGTCTCTTATAAGTGCTGCACACACCACAGGTCTGA
GGTTGGCAACCTCCCATTTTCTGACCTCCCCCTCTCATCCCTTCTAGAACACTCACCACC
CCAACTTCTAGACTTGCTCAAAGCTAGTGACTAGGACAGGATTTGATCCCATAACTCCCT
GTCTAAGGTGCTGATTGCTGCTAACCACATTGCCTGCATTCCTCTCTTGGTGGTAGCATG
CTGATGAGGTGATGCCCTAACCAACTGGACGGAGCCTCACTGATGAAATTCCAGGCACTG
GGACTGACAAGCTGGCGAAGGCTGTGGGTGGGGGTTGGGGCTGGGCAGGGAGGTAGCCTG
CAGCAGGCTTGGCACAGGAGGGAGGAGTCAGATGTAGAGGAAGTGGCCCATGTGGCTCTG
AGGCGCTCAGTGACCTGCTTGAGCTCCTGCTGACCTTTGGTGTTTGTTCTCTGATGACTT
GAGGGCTTGGGAGCCTGTGCCCTCACCTCAGACAGAACTGGAGGATCTAGGATGGCGTTC
ATCCCCTCTTCCTCTCTCCATCCTGGACACCTGCCCCGCCTTTCCCTCCAGGTATGCATC
TGTAGCCTGCCCCTCCGGGAGTCGCCAGCCAGCCTGGGGGTGGCAGAGAAATAAACAGCA
TTTCTGATGCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCAGCTTCACTGGCACATCCAGACCCCCAGGGCACTGTGGAGATTGCCAGTCCCAATG
TGGGTGCCGATGGGCGCGCCCTGCCAGGTGCCCTGGCAGCCAGCGCCCGGCCGCGCTTCC
AGGCCTTTGCCAATGGCAGTCTGCTCATCCCCGACTTTGGCAAGCTGGAGGAGGGCACCT
ACAGCTGCCTGGCCACCAATGAGCTGGGCAGTGCGGAGAGCTCAGTGAACGTGGCACTGG
CCACCCCGGGCGAGGGTGGCGAGGATGCGCTAGGGCGCATGTTCCACGGCAAAGCAGCCG
AGGGGAAGGGCTGCTACACGGTTGACAATGAGGTGCAGCCATCAGGTCCAGAGGACAACG
TTGTCATCATCTACCTCAGCCGCACTGGGGGCCCTGAGGCTGCAGCAACGGGAGAAGGGG
TCTCTGCACAGCAGCCCCCAGGCCTACTCCTGCTGGGCCAGAGCATCCTCCTTCTTGTAC
TCACTTTTTTCTAGCCCCACCTTGACCTGGGCTGGGCTGGAACAGCCCCAAGTCCTCACT
GACTCCTTCCCCTGACTCCGAGGCTGTCTCTTATAAGTGCTGCACACACCACAGGTCTGA
GGTTGGCAACCTCCCATTTTCTGACCTCCCCCTCTCATCCCTTCTAGAACACTCACCACC
CCAACTTCTAGACTTGCTCAAAGCTAGTGACTAGGACAGGATTTGATCCCATAACTCCCT
GTCTAAGGTGCTGATTGCTGCTAACCACATTGCCTGCATTCCTCTCTTGGTGGTAGCATG
CTGATGAGGTGATGCCCTAACCAACTGGACGGAGCCTCACTGATGAAATTCCAGGCACTG
GGACTGACAAGCTGGCGAAGGCTGTGGGTGGGGGTTGGGGCTGGGCAGGGAGGTAGCCTG
CAGCAGGCTTGGCACAGGAGGGAGGAGTCAGATGTAGAGGAAGTGGCCCATGTGGCTCTG
AGGCGCTCAGTGACCTGCTTGAGCTCCTGCTGACCTTTGGTGTTTGTTCTCTGATGACTT
GAGGGCTTGGGAGCCTGTGCCCTCACCTCAGACAGAACTGGAGGATCTAGGATGGCGTTC
ATCCCCTCTTCCTCTCTCCATCCTGGACACCTGCCCCGCCTTTCCCTCCAGGTATGCATC
TGTAGCCTGCCCCTCCGGGAGTCGCCAGCCAGCCTGGGGGTGGCAGAGAAATAAACAGCA
TTTCTGATGCAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               39-318, - strand, RNAz p=0.962476
               

               
               359-550, + strand, RNAz p=0.998827
               

               
               1008-1146, - strand, RNAz p=0.998147

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-318, - strand, RNAz p=0.962476
               

               
               359-550, + strand, RNAz p=0.998827
               

               
               1008-1146, - strand, RNAz p=0.998147

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               361-481, - strand, RNAmicro p=0.989733

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               361-481, - strand, RNAmicro p=0.989733

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1210, gnl|bosTau2|chr21 (23093773-23094998)
               

               
               1-1210, gnl|Hg17|chr15 (72255045-72256264)
               

               
               1-1210, gnl|Mm7|chr9 (58185651-58184475)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1210, gnl|bosTau2|chr21 (23093773-23094998)
               

               
               1-1210, gnl|Hg17|chr15 (72255045-72256264)
               

               
               1-1210, gnl|Mm7|chr9 (58185651-58184475)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ton (0.351)
               

               
               cga (0.279096)
               

               
               nep (0.183925)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.351)
               

               
               cga (0.279096)
               

               
               nep (0.183925)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	39-318, - strand, RNAz p=0.962476
	359-550, + strand, RNAz p=0.998827
	1008-1146, - strand, RNAz p=0.998147

	1-1210, gnl\|bosTau2\|chr21 (23093773-23094998)
	1-1210, gnl\|Hg17\|chr15 (72255045-72256264)
	1-1210, gnl\|Mm7\|chr9 (58185651-58184475)

	ton (0.351)
	cga (0.279096)
	nep (0.183925)
	csp (0.161186)
	pla (0.133672)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)