Non-Coding RNA Search

Ss1.1-Pig3-SRG8003O17.3

Sequence:


               
               GGTCTGAGAGGAGTGTTTTTCTGGAAGGCCATCTTTCGACACCCCTGCTTTCCTGATGTG
GAGCAGGAATTTGCACATGGTGTAGAGAGCTACCCTCCCTACCTCTCTGCCCAGCCTTGT
TACCTCACTCCTGCTCCGGCCGTGGCTGTGATGGGCCTAAGCCAGCTCCCTGTTTGGATG
TTCTGTATGAAGCTCAGGGGTCTTGGGCATTGTTTTCTGTTGTGACTTGAGGTCCTCAGC
AGGCCTGGGAGCCCAGAGGGAAGCTTTGGCTGCTGGCAAGAAGCACCTGGCCTGCCAAGA
GGAGTCGCAGCCAGACGATGTAGCGGACACGCCAAGGCGTAAAGAACATTGTCGTCTCTG
CCTCTCGGCCTTCCTTGCTTCTCTCAACATGATGAGACGCTGCAGACGCAAAGTGGTGGC
CGCTGCTCCAGGCAAGACAGCGGTCTCTGTCTGGAGGGCTGGCCCCAGGCTCGGGGGCCA
CACGCTGAGATTGCCTAGTGAAAACAACCATTTTTGCCAACAGTAGTGTGCGGCTCCCCA
CGTTTCTCTCTCCTGCACTCTCGGGCCAGACCACGCTCTGCATGGACCAGATCATCTTCC
CAAACCCATGGTGCTTTCCCCCCGCCTCAACCTCGACTCCAGGGTGGGGAGGGATGGGTC
AGAGGCCCTTGCGGCCCCTGGATAATCCTGACGTGGAGTGGAGAGGGGTGAGGCAGAGGG
AGCAGCCCCAATGCCTGCGCTGGGCTACACATGGGAAAGAACGGGCTGATTGCAGTCAAG
TCGTCTGGCCGTCTGTATTGGGATCTCTAACTGTACTTTGCCTGGCGCTGTGCGCAAGGT
CTGAAAGCTTAACTGCTAGTACCTAGAAACATACAAGGCTTCCCGGTCAAATCTTAATGT
AAAGTAGCTAGAGCCATGGAAGTACAGTATGAATTAAAAGAAAAAAGTATTGATCCACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTGAGAGGAGTGTTTTTCTGGAAGGCCATCTTTCGACACCCCTGCTTTCCTGATGTG
GAGCAGGAATTTGCACATGGTGTAGAGAGCTACCCTCCCTACCTCTCTGCCCAGCCTTGT
TACCTCACTCCTGCTCCGGCCGTGGCTGTGATGGGCCTAAGCCAGCTCCCTGTTTGGATG
TTCTGTATGAAGCTCAGGGGTCTTGGGCATTGTTTTCTGTTGTGACTTGAGGTCCTCAGC
AGGCCTGGGAGCCCAGAGGGAAGCTTTGGCTGCTGGCAAGAAGCACCTGGCCTGCCAAGA
GGAGTCGCAGCCAGACGATGTAGCGGACACGCCAAGGCGTAAAGAACATTGTCGTCTCTG
CCTCTCGGCCTTCCTTGCTTCTCTCAACATGATGAGACGCTGCAGACGCAAAGTGGTGGC
CGCTGCTCCAGGCAAGACAGCGGTCTCTGTCTGGAGGGCTGGCCCCAGGCTCGGGGGCCA
CACGCTGAGATTGCCTAGTGAAAACAACCATTTTTGCCAACAGTAGTGTGCGGCTCCCCA
CGTTTCTCTCTCCTGCACTCTCGGGCCAGACCACGCTCTGCATGGACCAGATCATCTTCC
CAAACCCATGGTGCTTTCCCCCCGCCTCAACCTCGACTCCAGGGTGGGGAGGGATGGGTC
AGAGGCCCTTGCGGCCCCTGGATAATCCTGACGTGGAGTGGAGAGGGGTGAGGCAGAGGG
AGCAGCCCCAATGCCTGCGCTGGGCTACACATGGGAAAGAACGGGCTGATTGCAGTCAAG
TCGTCTGGCCGTCTGTATTGGGATCTCTAACTGTACTTTGCCTGGCGCTGTGCGCAAGGT
CTGAAAGCTTAACTGCTAGTACCTAGAAACATACAAGGCTTCCCGGTCAAATCTTAATGT
AAAGTAGCTAGAGCCATGGAAGTACAGTATGAATTAAAAGAAAAAAGTATTGATCCACAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               40-155, - strand, RNAz p=0.732211
               

               
               348-506, - strand, RNAz p=0.997976
               

               
               626-739, + strand, RNAz p=0.547727

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-155, - strand, RNAz p=0.732211
               

               
               348-506, - strand, RNAz p=0.997976
               

               
               626-739, + strand, RNAz p=0.547727

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               48-185, - strand, RNAmicro p=0.999995
               

               
               63-142, + strand, RNAmicro p=0.999097

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               48-185, - strand, RNAmicro p=0.999995
               

               
               63-142, + strand, RNAmicro p=0.999097

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-958, gnl|bosTau2|chr15 (19029358-19030293)
               

               
               1-958, gnl|Hg17|chr11 (123002745-123003683)
               

               
               1-958, gnl|Mm7|chr9 (40224095-40223144)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-958, gnl|bosTau2|chr15 (19029358-19030293)
               

               
               1-958, gnl|Hg17|chr11 (123002745-123003683)
               

               
               1-958, gnl|Mm7|chr9 (40224095-40223144)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.271592)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	40-155, - strand, RNAz p=0.732211
	348-506, - strand, RNAz p=0.997976
	626-739, + strand, RNAz p=0.547727

	48-185, - strand, RNAmicro p=0.999995
	63-142, + strand, RNAmicro p=0.999097

	1-958, gnl\|bosTau2\|chr15 (19029358-19030293)
	1-958, gnl\|Hg17\|chr11 (123002745-123003683)
	1-958, gnl\|Mm7\|chr9 (40224095-40223144)

	fce (0.271592)
	ece (0.229305)
	mas (0.210305)
	fbs (0.175346)
	cov (0.132153)
	jej (0.0989218)