Non-Coding RNA Search

Ss1.1-Pig3-SRG8003O18.5

Sequence:


               
               CTCTGGCTGCACTACCTCACGGGTAAGATTCTGAAACAGATGACCTTCAATACCAAATGT
AACACCCCCACCTTGAAGCGAACAAGGAAGAAGATCCAGCATTTCCATGAGACCATGCTG
ACCTTCCGCTCTGCCACCGACCTGCTCTGCCAGCACAGTCTCTTTAAGTGAGCGGGGGCG
GGGGGCGCCCCCCAACCCCATCAGAGGGCTCGGGGCGGGAAGCCCCTGCTGCCGTTCTTA
ACCTCTAGCCCCAGAACAGGGTGGGATTCCCATGCGTAACAGGTGTCCAAGCAGCTTTTC
AAACAAGAATTTTGCTTCCCAGTGGAAACTGAAATGTTTGTTAACATGTTTAAACTTAAA
AATTATTCTTAAAAAATAAACTATACCGGAGCATAAATGTTTACAGCTGAAAGGCCCTCT
TGCTAACTGTCAGCAGACTCCATTCTGTAAATTCCTTCCCACCTTTTCCTTTTTGAGCCT
TGACACTTTATAGAGACTGAGCAGGGGGAGAAAAATCAGGAAAGCCCAAAGCCTCAGCTG
TCGCAGTGATCAGATCTGGTGGCTGTAGGTGTCAGAAGGCTGGCTTTGGGAACCTCACTG
CAGATGAGGAGTCACCTGCGAGCAAAGCGCCTGTAGCAAAGCAGAGATGGAGGCAGACAG
TCTGGAAGGCAAGAGGAAAGGAAGATGGTAGACACTTTATAGGGAGAAGTGTGAGAAATG
CCACCTGTTTATCAAGCTCACTTGCCAACCTCAAAGAAAAGCAGAAGTCATTGATTTTCA
AAGGGAAAATAAATGACTCCATGGCTTCTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGCTGCACTACCTCACGGGTAAGATTCTGAAACAGATGACCTTCAATACCAAATGT
AACACCCCCACCTTGAAGCGAACAAGGAAGAAGATCCAGCATTTCCATGAGACCATGCTG
ACCTTCCGCTCTGCCACCGACCTGCTCTGCCAGCACAGTCTCTTTAAGTGAGCGGGGGCG
GGGGGCGCCCCCCAACCCCATCAGAGGGCTCGGGGCGGGAAGCCCCTGCTGCCGTTCTTA
ACCTCTAGCCCCAGAACAGGGTGGGATTCCCATGCGTAACAGGTGTCCAAGCAGCTTTTC
AAACAAGAATTTTGCTTCCCAGTGGAAACTGAAATGTTTGTTAACATGTTTAAACTTAAA
AATTATTCTTAAAAAATAAACTATACCGGAGCATAAATGTTTACAGCTGAAAGGCCCTCT
TGCTAACTGTCAGCAGACTCCATTCTGTAAATTCCTTCCCACCTTTTCCTTTTTGAGCCT
TGACACTTTATAGAGACTGAGCAGGGGGAGAAAAATCAGGAAAGCCCAAAGCCTCAGCTG
TCGCAGTGATCAGATCTGGTGGCTGTAGGTGTCAGAAGGCTGGCTTTGGGAACCTCACTG
CAGATGAGGAGTCACCTGCGAGCAAAGCGCCTGTAGCAAAGCAGAGATGGAGGCAGACAG
TCTGGAAGGCAAGAGGAAAGGAAGATGGTAGACACTTTATAGGGAGAAGTGTGAGAAATG
CCACCTGTTTATCAAGCTCACTTGCCAACCTCAAAGAAAAGCAGAAGTCATTGATTTTCA
AAGGGAAAATAAATGACTCCATGGCTTCTAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-357, - strand, RNAz p=0.892654

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-357, - strand, RNAz p=0.892654

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-814, gnl|bosTau2|chr19 (18971372-18972150)
               

               
               1-814, gnl|Hg17|chr17 (3576205-3577414)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-814, gnl|bosTau2|chr19 (18971372-18972150)
               

               
               1-814, gnl|Hg17|chr17 (3576205-3577414)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-814, gnl\|bosTau2\|chr19 (18971372-18972150)
	1-814, gnl\|Hg17\|chr17 (3576205-3577414)