Non-Coding RNA Search

Ss1.1-Pig3-SRG8003O23.3

Sequence:


               
               GACATGTCCAAGGAATATTGCGAGGATTTGACCCCTTTATGAACCTTGTGATAGATGAAT
GTGTGGAGATGGCAACAAGTGGTCAACAGAACTAATATTGGAATGGTGGTGAGTAGAGAT
AGTAAAATTTCTCTTAGAGATTTTTCTTTTGGAGTAAGTATTAGCTTCCCTTCTACCAAA
CTCTTGGATTAAATTGAAGCTAGGTAAATTACAGGTAAGATTAGACATTCCATCTCCTTT
TGAGTTTAACATATGGCAGTTATTCAACTGTGGATAATATCGCAGTTATCTGTAGATTAG
ATCTGAATCTTACACAGAACCCACTGAGGTCAATGGGCTTGAAAGAGCTGTTGAAAATCA
TTTTTGAGCTTTATTCTATAATAGAGGCCCATACTTGTTCCTTCATTAAAGCAGTATTTC
TCAGTCTTAGCCATATTTTAGAATCAGATTAGTCTGGGATGCAGCATAGAGGTTTTAACG
TTCCCAGGTGATTCTAACAAAAGGAAGAGATTAATCACTGATCCAGAGTACTTATATGAA
AAAGAATATATATATATATAAGATTCAGATATATGTATATATTCTTTTTCCTCTTCTCCT
CCCTTATGGTTTATTACAGGATATTGAATACAGTTCCCTGTGCTATACAGCAGGACCCCA
TCTGTAACTCATCTGCTCTACACGTAATAACCTGCATCTGCCAATCCCAAACTCCCAGTT
GGTCTCCAATGATATATATTAAAATTGAATGTCCCCCCACAATCACAAATTGGTGCTCCA
TGTCTGAGTCTGTTTATGCCTTATAAAGTTCTTTTG------------------------
------------------------------------------------TCACTTAGTATG
GTAAACTATAGGTCTATCCATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACATGTCCAAGGAATATTGCGAGGATTTGACCCCTTTATGAACCTTGTGATAGATGAAT
GTGTGGAGATGGCAACAAGTGGTCAACAGAACTAATATTGGAATGGTGGTGAGTAGAGAT
AGTAAAATTTCTCTTAGAGATTTTTCTTTTGGAGTAAGTATTAGCTTCCCTTCTACCAAA
CTCTTGGATTAAATTGAAGCTAGGTAAATTACAGGTAAGATTAGACATTCCATCTCCTTT
TGAGTTTAACATATGGCAGTTATTCAACTGTGGATAATATCGCAGTTATCTGTAGATTAG
ATCTGAATCTTACACAGAACCCACTGAGGTCAATGGGCTTGAAAGAGCTGTTGAAAATCA
TTTTTGAGCTTTATTCTATAATAGAGGCCCATACTTGTTCCTTCATTAAAGCAGTATTTC
TCAGTCTTAGCCATATTTTAGAATCAGATTAGTCTGGGATGCAGCATAGAGGTTTTAACG
TTCCCAGGTGATTCTAACAAAAGGAAGAGATTAATCACTGATCCAGAGTACTTATATGAA
AAAGAATATATATATATATAAGATTCAGATATATGTATATATTCTTTTTCCTCTTCTCCT
CCCTTATGGTTTATTACAGGATATTGAATACAGTTCCCTGTGCTATACAGCAGGACCCCA
TCTGTAACTCATCTGCTCTACACGTAATAACCTGCATCTGCCAATCCCAAACTCCCAGTT
GGTCTCCAATGATATATATTAAAATTGAATGTCCCCCCACAATCACAAATTGGTGCTCCA
TGTCTGAGTCTGTTTATGCCTTATAAAGTTCTTTTG------------------------
------------------------------------------------TCACTTAGTATG
GTAAACTATAGGTCTATCCATTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55242066|gb|EAA07689.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55242066|gb|EAA07689.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               524-719, - strand, RNAz p=0.998929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               524-719, - strand, RNAz p=0.998929

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-412, gnl|bosTau2|chr11 (49582612-49582186)
               

               
               1-412, gnl|Hg17|chr2 (70426957-70426562)
               

               
               1-412, gnl|Mm7|chr6 (86451599-86451976)
               


               
               523-727, gnl|bosTau2|chr13 (37640399-37640598)
               


               
               524-719, gnl|bosTau2|chr10 (34174826-34175018)
               


               
               546-714, gnl|bosTau2|chr10 (24902855-24903020)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-412, gnl|bosTau2|chr11 (49582612-49582186)
               

               
               1-412, gnl|Hg17|chr2 (70426957-70426562)
               

               
               1-412, gnl|Mm7|chr6 (86451599-86451976)
               


               
               523-727, gnl|bosTau2|chr13 (37640399-37640598)
               


               
               524-719, gnl|bosTau2|chr10 (34174826-34175018)
               


               
               546-714, gnl|bosTau2|chr10 (24902855-24903020)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	1-412, gnl\|bosTau2\|chr11 (49582612-49582186)
	1-412, gnl\|Hg17\|chr2 (70426957-70426562)
	1-412, gnl\|Mm7\|chr6 (86451599-86451976)

	523-727, gnl\|bosTau2\|chr13 (37640399-37640598)

	524-719, gnl\|bosTau2\|chr10 (34174826-34175018)

	546-714, gnl\|bosTau2\|chr10 (24902855-24903020)