Ss1.1-Pig3-SRG8003P13.3
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GGTGGCGGTGGCTGCTGCTGCTGTGGCCGCGCTGACAGGACACGAGCTCTATGCCTTTCC GGCTGCTCGTCCCGCTTGGCCTCCTGTGCGCGCTGCTGCCCTTGCACCATGGTGCGCCGG GCCCCGATGGCACCGCGCCCGACCCCGCGCACTACAGGGAGCGAGTCAAGGCCATGTTCT ACCACGCCTACGACAGCTACCTGGAGAATGCCTTTCCCTACGACGAGCTGCGACCTCTCA CCTGTGACGGGCACGACACCTGGGGCAGTTTTTCTCTGACTCTAATCGATGCTCTGGACA CCTTGTTGATTTTGGGGAATGTCTCAGAATTTCAAAGAGTGGTTGAAGTACTCCAGGACA ACGTGGACTTTGATATTGATGTCAATGCCTCTGTGTTCGAAACCAACATCCGAGTGGTAG GAGGACTTCTGTCTGCTCACCTGCTATCAAAGAAGGCTGGGGTGGAAGTGGAGGCTGGAT GGCCCTGCTCCGGACCTCTTCTGAGGATGGCTGAGGAGGCAGCCCGGAAACTCCTCCCAG CATTTCAGACCCCTACTGGCATGCCATATGGAACAGTGAACCTGCTTCATGGTGTGAACC CAGGAGAGACTCCTGTCACCTGTACGGCAGGGATTGGGACCTTCATTGTGGAATTTGCCA CCCTGAGCAGCCTTACTGGTGACCCCGTGTTTGAAGATGTGGCCAGAGTGGCCCTGATGC GTCTCTGGGAGAGCCGGTCAGATATTGGGCTGGTTGGCAACCACATCGACGTGCTCACTG GCAAGTGGGTGGCCCAGGACGCGGGCATTGGGGCTGGCGTGGACTCTTACTTTGAGTACC TGGTGAAAGGAGCCATCCTTCTTCAGGATAAGAAGCTCATGGCCATGTTCCTAGAGTATA ACAAAGCCATTCGGAATTACACCCGCTTCGATGACTGGTACCTGTGGGTGCAGATGTACA AGGGGACTGTGTCCATGCCGGTCTTCCAGTCTCTGGAGGCCTACTGGCCTGGTCTTCAGA GCCTCATTGGGGACATTGACAATGCCATGAGAACCTTCCTCAACTACTACACCGTCTGGA AGCAGTTTGGGGGGCTCCCAGAATTCTACAACATTCCTCAGGGATATACAGTGGAGAAGC GAGAGGGCTACCCACTCCGGCCGGAACTCATTGAGAGCGCAATGTACCTCTACCGTGCTA CGGGGGACCCCACCCTCTTAGAACTCGGAAGAGATGCTGTGGAATCCATCGAAAAAATCA GCAAGGTGGAATGTGGATTTGCCACAATCAAAGATCTGCGAGACCACAAGCTTGACAACC GTATGGAGTCTTTCTTCCTGGCCGAGACTGTGAAATACCTCTACCTGCTGTTTGACCCTT CCAACTTCATCCACAACAATGGTTCCACCTTTGATGCGGTGATAACCCCCTATGGGGAGT GCATCCTGGGAGCTGGGGGTTACATCTTCAACACAGAAGCGCACCCCATCGACCCTGCTG CCCTGCACTGTTGCCGGAGGCTGAAGGAAGAGCAGTGGGAAGTGGAAGATTTGATGAGGG AATTCTACTCTCTCAAACGGAATAGGTCGAGATTTCACAAAAAATCTATGAGCTCTGGGC CATGGGAACCCCCAACAGGGCCAGGAACATTCTCCTCCTCTGAAAACCATGACCAGGCAA GGGAGAAGAAGCCTGCCAAGAGGAAAATCCCACTTCTCAGCTGCCCTAGTCGGCCCTTTA CCTCGAAGTTGGCATTACTGGGACAGGTTTTCCTAGACTCCTCATAACCACTGGATGACT TTTTTGTTTTTGAAACTAAACTATAACAATAAATCTACTTTTGACTAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GGTGGCGGTGGCTGCTGCTGCTGTGGCCGCGCTGACAGGACACGAGCTCTATGCCTTTCC GGCTGCTCGTCCCGCTTGGCCTCCTGTGCGCGCTGCTGCCCTTGCACCATGGTGCGCCGG GCCCCGATGGCACCGCGCCCGACCCCGCGCACTACAGGGAGCGAGTCAAGGCCATGTTCT ACCACGCCTACGACAGCTACCTGGAGAATGCCTTTCCCTACGACGAGCTGCGACCTCTCA CCTGTGACGGGCACGACACCTGGGGCAGTTTTTCTCTGACTCTAATCGATGCTCTGGACA CCTTGTTGATTTTGGGGAATGTCTCAGAATTTCAAAGAGTGGTTGAAGTACTCCAGGACA ACGTGGACTTTGATATTGATGTCAATGCCTCTGTGTTCGAAACCAACATCCGAGTGGTAG GAGGACTTCTGTCTGCTCACCTGCTATCAAAGAAGGCTGGGGTGGAAGTGGAGGCTGGAT GGCCCTGCTCCGGACCTCTTCTGAGGATGGCTGAGGAGGCAGCCCGGAAACTCCTCCCAG CATTTCAGACCCCTACTGGCATGCCATATGGAACAGTGAACCTGCTTCATGGTGTGAACC CAGGAGAGACTCCTGTCACCTGTACGGCAGGGATTGGGACCTTCATTGTGGAATTTGCCA CCCTGAGCAGCCTTACTGGTGACCCCGTGTTTGAAGATGTGGCCAGAGTGGCCCTGATGC GTCTCTGGGAGAGCCGGTCAGATATTGGGCTGGTTGGCAACCACATCGACGTGCTCACTG GCAAGTGGGTGGCCCAGGACGCGGGCATTGGGGCTGGCGTGGACTCTTACTTTGAGTACC TGGTGAAAGGAGCCATCCTTCTTCAGGATAAGAAGCTCATGGCCATGTTCCTAGAGTATA ACAAAGCCATTCGGAATTACACCCGCTTCGATGACTGGTACCTGTGGGTGCAGATGTACA AGGGGACTGTGTCCATGCCGGTCTTCCAGTCTCTGGAGGCCTACTGGCCTGGTCTTCAGA GCCTCATTGGGGACATTGACAATGCCATGAGAACCTTCCTCAACTACTACACCGTCTGGA AGCAGTTTGGGGGGCTCCCAGAATTCTACAACATTCCTCAGGGATATACAGTGGAGAAGC GAGAGGGCTACCCACTCCGGCCGGAACTCATTGAGAGCGCAATGTACCTCTACCGTGCTA CGGGGGACCCCACCCTCTTAGAACTCGGAAGAGATGCTGTGGAATCCATCGAAAAAATCA GCAAGGTGGAATGTGGATTTGCCACAATCAAAGATCTGCGAGACCACAAGCTTGACAACC GTATGGAGTCTTTCTTCCTGGCCGAGACTGTGAAATACCTCTACCTGCTGTTTGACCCTT CCAACTTCATCCACAACAATGGTTCCACCTTTGATGCGGTGATAACCCCCTATGGGGAGT GCATCCTGGGAGCTGGGGGTTACATCTTCAACACAGAAGCGCACCCCATCGACCCTGCTG CCCTGCACTGTTGCCGGAGGCTGAAGGAAGAGCAGTGGGAAGTGGAAGATTTGATGAGGG AATTCTACTCTCTCAAACGGAATAGGTCGAGATTTCACAAAAAATCTATGAGCTCTGGGC CATGGGAACCCCCAACAGGGCCAGGAACATTCTCCTCCTCTGAAAACCATGACCAGGCAA GGGAGAAGAAGCCTGCCAAGAGGAAAATCCCACTTCTCAGCTGCCCTAGTCGGCCCTTTA CCTCGAAGTTGGCATTACTGGGACAGGTTTTCCTAGACTCCTCATAACCACTGGATGACT TTTTTGTTTTTGAAACTAAACTATAACAATAAATCTACTTTTGACTAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
1683-1802, - strand, RNAz p=0.661726 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1683-1802, - strand, RNAz p=0.661726 |
Aligned organism(s): 91 entry(ies) | More info |
Aligned organism(s): 91 entry(ies) | Help | Less info |
1-158, gnl|bosTau2|chr13 (46431025-46431182) | |
1-158, gnl|canFam2|chr24 (27137271-27137513) | |
1-158, gnl|dasNov1|scaffold_237019 (4215-3969) | |
1-158, gnl|echTel1|scaffold_186172 (7435-7680) | |
1-158, gnl|hg17|chr20 (33198500-33198735) | |
1-158, gnl|Hg17|chr20 (33198772-33198615) | |
1-158, gnl|loxAfr1|scaffold_14183 (45045-45298) | |
1-158, gnl|mm7|chr2 (155469962-155470208) | |
1-158, gnl|Mm7|chr2 (155470245-155470088) | |
1-158, gnl|monDom2|scaffold_6 (11834929-11834652) | |
1-158, gnl|oryCun1|scaffold_147839 (12697-12456) | |
1-158, gnl|panTro1|chr21 (35213466-35213707) | |
1-158, gnl|rheMac2|chr10 (29402604-29402356) | |
1-158, gnl|rn3|chr3 (146146388-146146634) | |
308-429, gnl|bosTau2|chr13 (46436216-46436337) | |
308-429, gnl|canFam2|chr24 (27131448-27131595) | |
308-429, gnl|danRer3|chr23 (3540031-3539879) | |
308-429, gnl|dasNov1|scaffold_70472 (2182-2028) | |
308-429, gnl|echTel1|scaffold_318135 (133625-133782) | |
308-429, gnl|fr1|chrUn (316868262-316868150) | |
308-429, gnl|hg17|chr20 (33193818-33193975) | |
308-429, gnl|Hg17|chr20 (33193943-33193822) | |
308-429, gnl|loxAfr1|scaffold_14183 (39346-39502) | |
308-429, gnl|mm7|chr2 (155463271-155463427) | |
308-429, gnl|Mm7|chr2 (155463396-155463275) | |
308-429, gnl|monDom2|scaffold_6 (11838986-11838803) | |
308-429, gnl|oryCun1|scaffold_66316 (845-1000) | |
308-429, gnl|panTro1|chr21 (35208786-35208943) | |
308-429, gnl|rheMac2|chr10 (29407920-29407763) | |
308-429, gnl|rn3|chr3 (146140071-146140227) | |
308-429, gnl|tetNig1|chr9 (10357573-10357683) | |
308-429, gnl|xenTro1|scaffold_35 (3115203-3115053) | |
538-757, gnl|bosTau2|chr13 (46441705-46441924) | |
538-757, gnl|canFam2|chr24 (27122706-27122964) | |
538-757, gnl|danRer3|chr23 (3551338-3551087) | |
538-757, gnl|dasNov1|scaffold_25558 (6147-5890) | |
538-757, gnl|echTel1|scaffold_318135 (127576-127834) | |
538-757, gnl|fr1|chrUn (316868905-316868643) | |
538-757, gnl|galGal2|chr20 (2409050-2408828) | |
538-757, gnl|hg17|chr20 (33186180-33186438) | |
538-757, gnl|Hg17|chr20 (33186416-33186197) | |
538-757, gnl|loxAfr1|scaffold_14183 (34078-34336) | |
538-757, gnl|mm7|chr2 (155456846-155457104) | |
538-757, gnl|Mm7|chr2 (155457082-155456863) | |
538-757, gnl|monDom2|scaffold_6 (11840854-11840597) | |
538-757, gnl|oryCun1|scaffold_127941 (1095-1320) | |
538-757, gnl|panTro1|chr21 (35201093-35201351) | |
538-757, gnl|rheMac2|chr10 (29415835-29415577) | |
538-757, gnl|rn3|chr3 (146134200-146134458) | |
538-757, gnl|tetNig1|chr9 (10356972-10357209) | |
538-757, gnl|xenTro1|scaffold_35 (3116556-3116306) | |
1014-1162, gnl|bosTau2|chr13 (46451028-46451176) | |
1014-1162, gnl|canFam2|chr24 (27114317-27114481) | |
1014-1162, gnl|danRer3|chr23 (3556926-3556774) | |
1014-1162, gnl|dasNov1|scaffold_25558 (15878-15714) | |
1014-1162, gnl|echTel1|scaffold_318135 (122842-123006) | |
1014-1162, gnl|fr1|chrUn (316869667-316869525) | |
1014-1162, gnl|galGal2|chr20 (2411668-2411504) | |
1014-1162, gnl|hg17|chr20 (33175345-33175509) | |
1014-1162, gnl|Hg17|chr20 (33175504-33175356) | |
1014-1162, gnl|loxAfr1|scaffold_46865 (659-495) | |
1014-1162, gnl|mm7|chr2 (155449781-155449945) | |
1014-1162, gnl|Mm7|chr2 (155449940-155449792) | |
1014-1162, gnl|monDom2|scaffold_6 (11846930-11846766) | |
1014-1162, gnl|panTro1|chr21 (35190253-35190417) | |
1014-1162, gnl|rheMac2|chr10 (29426614-29426450) | |
1014-1162, gnl|rn3|chr3 (146127075-146127243) | |
1014-1162, gnl|tetNig1|chr9 (10356338-10356484) | |
1014-1162, gnl|xenTro1|scaffold_35 (3117734-3117575) | |
1164-1286, gnl|bosTau2|chr13 (46454984-46455106) | |
1164-1286, gnl|canFam2|chr24 (27111241-27111398) | |
1164-1286, gnl|danRer3|chr23 (3560572-3560412) | |
1164-1286, gnl|dasNov1|scaffold_25558 (17533-17376) | |
1164-1286, gnl|echTel1|scaffold_318135 (119592-119747) | |
1164-1286, gnl|fr1|chrUn (323671017-323671145) | |
1164-1286, gnl|galGal2|chr20 (2412715-2412556) | |
1164-1286, gnl|hg17|chr20 (33170053-33170210) | |
1164-1286, gnl|Hg17|chr20 (33170184-33170062) | |
1164-1286, gnl|loxAfr1|scaffold_46865 (3546-3392) | |
1164-1286, gnl|mm7|chr2 (155446504-155446659) | |
1164-1286, gnl|Mm7|chr2 (155446635-155446513) | |
1164-1286, gnl|monDom2|scaffold_6 (11848692-11848535) | |
1164-1286, gnl|oryCun1|scaffold_199656 (8849-9006) | |
1164-1286, gnl|panTro1|chr21 (35184955-35185112) | |
1164-1286, gnl|rheMac2|chr10 (29433340-29433183) | |
1164-1286, gnl|rn3|chr3 (146123736-146123891) | |
1164-1286, gnl|tetNig1|chr9 (10356067-10356194) | |
1164-1286, gnl|xenTro1|scaffold_35 (3118453-3118310) | |
1287-1831, gnl|bosTau2|chr13 (46457941-46458485) | |
1287-1831, gnl|Hg17|chr20 (33167397-33166904) | |
1287-1831, gnl|Mm7|chr2 (155443450-155442960) |
Aligned organism(s): 91 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
1-158, gnl|bosTau2|chr13 (46431025-46431182) | |
1-158, gnl|canFam2|chr24 (27137271-27137513) | |
1-158, gnl|dasNov1|scaffold_237019 (4215-3969) | |
1-158, gnl|echTel1|scaffold_186172 (7435-7680) | |
1-158, gnl|hg17|chr20 (33198500-33198735) | |
1-158, gnl|Hg17|chr20 (33198772-33198615) | |
1-158, gnl|loxAfr1|scaffold_14183 (45045-45298) | |
1-158, gnl|mm7|chr2 (155469962-155470208) | |
1-158, gnl|Mm7|chr2 (155470245-155470088) | |
1-158, gnl|monDom2|scaffold_6 (11834929-11834652) | |
1-158, gnl|oryCun1|scaffold_147839 (12697-12456) | |
1-158, gnl|panTro1|chr21 (35213466-35213707) | |
1-158, gnl|rheMac2|chr10 (29402604-29402356) | |
1-158, gnl|rn3|chr3 (146146388-146146634) | |
308-429, gnl|bosTau2|chr13 (46436216-46436337) | |
308-429, gnl|canFam2|chr24 (27131448-27131595) | |
308-429, gnl|danRer3|chr23 (3540031-3539879) | |
308-429, gnl|dasNov1|scaffold_70472 (2182-2028) | |
308-429, gnl|echTel1|scaffold_318135 (133625-133782) | |
308-429, gnl|fr1|chrUn (316868262-316868150) | |
308-429, gnl|hg17|chr20 (33193818-33193975) | |
308-429, gnl|Hg17|chr20 (33193943-33193822) | |
308-429, gnl|loxAfr1|scaffold_14183 (39346-39502) | |
308-429, gnl|mm7|chr2 (155463271-155463427) | |
308-429, gnl|Mm7|chr2 (155463396-155463275) | |
308-429, gnl|monDom2|scaffold_6 (11838986-11838803) | |
308-429, gnl|oryCun1|scaffold_66316 (845-1000) | |
308-429, gnl|panTro1|chr21 (35208786-35208943) | |
308-429, gnl|rheMac2|chr10 (29407920-29407763) | |
308-429, gnl|rn3|chr3 (146140071-146140227) | |
308-429, gnl|tetNig1|chr9 (10357573-10357683) | |
308-429, gnl|xenTro1|scaffold_35 (3115203-3115053) | |
538-757, gnl|bosTau2|chr13 (46441705-46441924) | |
538-757, gnl|canFam2|chr24 (27122706-27122964) | |
538-757, gnl|danRer3|chr23 (3551338-3551087) | |
538-757, gnl|dasNov1|scaffold_25558 (6147-5890) | |
538-757, gnl|echTel1|scaffold_318135 (127576-127834) | |
538-757, gnl|fr1|chrUn (316868905-316868643) | |
538-757, gnl|galGal2|chr20 (2409050-2408828) | |
538-757, gnl|hg17|chr20 (33186180-33186438) | |
538-757, gnl|Hg17|chr20 (33186416-33186197) | |
538-757, gnl|loxAfr1|scaffold_14183 (34078-34336) | |
538-757, gnl|mm7|chr2 (155456846-155457104) | |
538-757, gnl|Mm7|chr2 (155457082-155456863) | |
538-757, gnl|monDom2|scaffold_6 (11840854-11840597) | |
538-757, gnl|oryCun1|scaffold_127941 (1095-1320) | |
538-757, gnl|panTro1|chr21 (35201093-35201351) | |
538-757, gnl|rheMac2|chr10 (29415835-29415577) | |
538-757, gnl|rn3|chr3 (146134200-146134458) | |
538-757, gnl|tetNig1|chr9 (10356972-10357209) | |
538-757, gnl|xenTro1|scaffold_35 (3116556-3116306) | |
1014-1162, gnl|bosTau2|chr13 (46451028-46451176) | |
1014-1162, gnl|canFam2|chr24 (27114317-27114481) | |
1014-1162, gnl|danRer3|chr23 (3556926-3556774) | |
1014-1162, gnl|dasNov1|scaffold_25558 (15878-15714) | |
1014-1162, gnl|echTel1|scaffold_318135 (122842-123006) | |
1014-1162, gnl|fr1|chrUn (316869667-316869525) | |
1014-1162, gnl|galGal2|chr20 (2411668-2411504) | |
1014-1162, gnl|hg17|chr20 (33175345-33175509) | |
1014-1162, gnl|Hg17|chr20 (33175504-33175356) | |
1014-1162, gnl|loxAfr1|scaffold_46865 (659-495) | |
1014-1162, gnl|mm7|chr2 (155449781-155449945) | |
1014-1162, gnl|Mm7|chr2 (155449940-155449792) | |
1014-1162, gnl|monDom2|scaffold_6 (11846930-11846766) | |
1014-1162, gnl|panTro1|chr21 (35190253-35190417) | |
1014-1162, gnl|rheMac2|chr10 (29426614-29426450) | |
1014-1162, gnl|rn3|chr3 (146127075-146127243) | |
1014-1162, gnl|tetNig1|chr9 (10356338-10356484) | |
1014-1162, gnl|xenTro1|scaffold_35 (3117734-3117575) | |
1164-1286, gnl|bosTau2|chr13 (46454984-46455106) | |
1164-1286, gnl|canFam2|chr24 (27111241-27111398) | |
1164-1286, gnl|danRer3|chr23 (3560572-3560412) | |
1164-1286, gnl|dasNov1|scaffold_25558 (17533-17376) | |
1164-1286, gnl|echTel1|scaffold_318135 (119592-119747) | |
1164-1286, gnl|fr1|chrUn (323671017-323671145) | |
1164-1286, gnl|galGal2|chr20 (2412715-2412556) | |
1164-1286, gnl|hg17|chr20 (33170053-33170210) | |
1164-1286, gnl|Hg17|chr20 (33170184-33170062) | |
1164-1286, gnl|loxAfr1|scaffold_46865 (3546-3392) | |
1164-1286, gnl|mm7|chr2 (155446504-155446659) | |
1164-1286, gnl|Mm7|chr2 (155446635-155446513) | |
1164-1286, gnl|monDom2|scaffold_6 (11848692-11848535) | |
1164-1286, gnl|oryCun1|scaffold_199656 (8849-9006) | |
1164-1286, gnl|panTro1|chr21 (35184955-35185112) | |
1164-1286, gnl|rheMac2|chr10 (29433340-29433183) | |
1164-1286, gnl|rn3|chr3 (146123736-146123891) | |
1164-1286, gnl|tetNig1|chr9 (10356067-10356194) | |
1164-1286, gnl|xenTro1|scaffold_35 (3118453-3118310) | |
1287-1831, gnl|bosTau2|chr13 (46457941-46458485) | |
1287-1831, gnl|Hg17|chr20 (33167397-33166904) | |
1287-1831, gnl|Mm7|chr2 (155443450-155442960) |
Expressed library(ies): 16 entry(ies) | More info |
Expressed library(ies): 16 entry(ies) | Help | Less info |
cty (0.31224) | |
cte (0.29274) | |
nms (0.213858) | |
fcc (0.197785) | |
nep (0.183925) | |
cje (0.165235) | |
csp (0.161186) | |
spl (0.143184) | |
hyp (0.142837) | |
che (0.136314) | |
ute (0.132784) | |
cov (0.132153) | |
sug (0.127291) | |
cly (0.120642) | |
jca (0.11396) | |
jej (0.0989218) |
Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cty (0.31224) | |
cte (0.29274) | |
nms (0.213858) | |
fcc (0.197785) | |
nep (0.183925) | |
cje (0.165235) | |
csp (0.161186) | |
spl (0.143184) | |
hyp (0.142837) | |
che (0.136314) | |
ute (0.132784) | |
cov (0.132153) | |
sug (0.127291) | |
cly (0.120642) | |
jca (0.11396) | |
jej (0.0989218) |