Non-Coding RNA Search

Ss1.1-Pig3-SRG8004A07.5

Sequence:


               
               ACCAGGAGACCATGGCCCCCCCCATCAAGTCCAAGAAGAAGAGGAACAGCTCCTTCATGC
TGCCCAAGCTCGTCAAGTCCCAGCTGCGCAAGATGAGCGGGGTGTTCAGCTCCTTCCTGA
CCCCGGAGAAGCGCATGGTGCGCCGCATCGCCGAGCTGGCCCGGGACAAGCGCACCTACT
TCGGCTGCCTGGTGCAGGACTACGTGAGCTTCCTGCAGGAGAACAAGGAGTGCCATGTGT
CCAGCACAGACCTGCTGCAGACCATCCGGCAGTTCATGACCCAGGTGAAAAACTACTTGT
CCCAGAGCTCCGAGCTGGACCCCCCCATTGAGTCGCTGATCCCCGAGGACCAAATAGATG
TGGTGTTGGAAAAAGCCATGCACAAGTGCATCTTGAAGCCCCTGAAGGGCCACGTCGAGG
CCATGCTGAAGCACTTCCATGTGGCCGACGGCTCGTGGAAACAACTCAAGGAGAACCTGC
AGCTCGTGCGGCAGAGGAATCCACAGGAGCTGGGCGTCTTTGCCCCCACCCCTGACTTTG
TGGACGTGGAGAAAATCAAGGTCAAGTTCACGACCATGCAGAAGATGTATTCGCCGGAAA
AGAAAGTCATGCTGCTGCTGAGAGTCTGCAAGCTCATATACACTGTCATGGAGAACAACT
CAGGGAGGATGTATGGAGCTGACGACTTTTTACCCGTCCTGACCTATGTCATAGCTCAGT
GTGACATGCTGGAACTGGACACTGAGATCGAGTATATGATGGAGCTCCTGGACCCGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGGAGACCATGGCCCCCCCCATCAAGTCCAAGAAGAAGAGGAACAGCTCCTTCATGC
TGCCCAAGCTCGTCAAGTCCCAGCTGCGCAAGATGAGCGGGGTGTTCAGCTCCTTCCTGA
CCCCGGAGAAGCGCATGGTGCGCCGCATCGCCGAGCTGGCCCGGGACAAGCGCACCTACT
TCGGCTGCCTGGTGCAGGACTACGTGAGCTTCCTGCAGGAGAACAAGGAGTGCCATGTGT
CCAGCACAGACCTGCTGCAGACCATCCGGCAGTTCATGACCCAGGTGAAAAACTACTTGT
CCCAGAGCTCCGAGCTGGACCCCCCCATTGAGTCGCTGATCCCCGAGGACCAAATAGATG
TGGTGTTGGAAAAAGCCATGCACAAGTGCATCTTGAAGCCCCTGAAGGGCCACGTCGAGG
CCATGCTGAAGCACTTCCATGTGGCCGACGGCTCGTGGAAACAACTCAAGGAGAACCTGC
AGCTCGTGCGGCAGAGGAATCCACAGGAGCTGGGCGTCTTTGCCCCCACCCCTGACTTTG
TGGACGTGGAGAAAATCAAGGTCAAGTTCACGACCATGCAGAAGATGTATTCGCCGGAAA
AGAAAGTCATGCTGCTGCTGAGAGTCTGCAAGCTCATATACACTGTCATGGAGAACAACT
CAGGGAGGATGTATGGAGCTGACGACTTTTTACCCGTCCTGACCTATGTCATAGCTCAGT
GTGACATGCTGGAACTGGACACTGAGATCGAGTATATGATGGAGCTCCTGGACCCGTCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879947|ref|XP_592145.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879947|ref|XP_592145.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               356-514, + strand, RNAz p=0.78024

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-514, + strand, RNAz p=0.78024

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               356-668, gnl|bosTau2|chr13 (26878516-26878203)
               

               
               356-668, gnl|canFam2|chr24 (6358071-6357744)
               

               
               356-668, gnl|danRer3|chr13 (23618796-23618476)
               

               
               356-668, gnl|dasNov1|scaffold_1265 (33303-32976)
               

               
               356-668, gnl|echTel1|scaffold_285732 (1664-1337)
               

               
               356-668, gnl|fr1|chrUn (38243522-38243851)
               

               
               356-668, gnl|galGal2|chr3 (4040224-4040548)
               

               
               356-668, gnl|hg17|chr20 (19918637-19918964)
               

               
               356-668, gnl|Hg17|chr20 (19918648-19918961)
               

               
               356-668, gnl|loxAfr1|scaffold_114037 (3918-3600)
               

               
               356-668, gnl|mm7|chr2 (145617234-145617562)
               

               
               356-668, gnl|Mm7|chr2 (145617246-145617559)
               

               
               356-668, gnl|monDom2|scaffold_1 (55120591-55120918)
               

               
               356-668, gnl|oryCun1|scaffold_206331 (171298-170971)
               

               
               356-668, gnl|panTro1|chr21 (19840264-19840591)
               

               
               356-668, gnl|rheMac2|chr10 (53297844-53298171)
               

               
               356-668, gnl|rn3|chr3 (134396603-134396930)
               

               
               356-668, gnl|tetNig1|chr17 (8032897-8033229)
               

               
               356-668, gnl|xenTro1|scaffold_352 (1168988-1168670)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               356-668, gnl|bosTau2|chr13 (26878516-26878203)
               

               
               356-668, gnl|canFam2|chr24 (6358071-6357744)
               

               
               356-668, gnl|danRer3|chr13 (23618796-23618476)
               

               
               356-668, gnl|dasNov1|scaffold_1265 (33303-32976)
               

               
               356-668, gnl|echTel1|scaffold_285732 (1664-1337)
               

               
               356-668, gnl|fr1|chrUn (38243522-38243851)
               

               
               356-668, gnl|galGal2|chr3 (4040224-4040548)
               

               
               356-668, gnl|hg17|chr20 (19918637-19918964)
               

               
               356-668, gnl|Hg17|chr20 (19918648-19918961)
               

               
               356-668, gnl|loxAfr1|scaffold_114037 (3918-3600)
               

               
               356-668, gnl|mm7|chr2 (145617234-145617562)
               

               
               356-668, gnl|Mm7|chr2 (145617246-145617559)
               

               
               356-668, gnl|monDom2|scaffold_1 (55120591-55120918)
               

               
               356-668, gnl|oryCun1|scaffold_206331 (171298-170971)
               

               
               356-668, gnl|panTro1|chr21 (19840264-19840591)
               

               
               356-668, gnl|rheMac2|chr10 (53297844-53298171)
               

               
               356-668, gnl|rn3|chr3 (134396603-134396930)
               

               
               356-668, gnl|tetNig1|chr17 (8032897-8033229)
               

               
               356-668, gnl|xenTro1|scaffold_352 (1168988-1168670)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	356-668, gnl\|bosTau2\|chr13 (26878516-26878203)
	356-668, gnl\|canFam2\|chr24 (6358071-6357744)
	356-668, gnl\|danRer3\|chr13 (23618796-23618476)
	356-668, gnl\|dasNov1\|scaffold_1265 (33303-32976)
	356-668, gnl\|echTel1\|scaffold_285732 (1664-1337)
	356-668, gnl\|fr1\|chrUn (38243522-38243851)
	356-668, gnl\|galGal2\|chr3 (4040224-4040548)
	356-668, gnl\|hg17\|chr20 (19918637-19918964)
	356-668, gnl\|Hg17\|chr20 (19918648-19918961)
	356-668, gnl\|loxAfr1\|scaffold_114037 (3918-3600)
	356-668, gnl\|mm7\|chr2 (145617234-145617562)
	356-668, gnl\|Mm7\|chr2 (145617246-145617559)
	356-668, gnl\|monDom2\|scaffold_1 (55120591-55120918)
	356-668, gnl\|oryCun1\|scaffold_206331 (171298-170971)
	356-668, gnl\|panTro1\|chr21 (19840264-19840591)
	356-668, gnl\|rheMac2\|chr10 (53297844-53298171)
	356-668, gnl\|rn3\|chr3 (134396603-134396930)
	356-668, gnl\|tetNig1\|chr17 (8032897-8033229)
	356-668, gnl\|xenTro1\|scaffold_352 (1168988-1168670)