Ss1.1-Pig3-SRG8004A16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCTTGTGTCCGTTCGCTGGAGGTTTGGCCACGTCAAATCGGTTTTCTCAAAAAGCAG GGAGCGGACCTCTCTCCTCACAGCTAACACAGACAGAAAAGGGAGCTGGGGAGGAAAAGG CTCTTTGCGCTGGAGATTCCTGGGCCAGGCTTCTCATTTTCCCAGGCTGCTTCCTCTCCC GGGTGAGGGGCGCCCTGCGAGTAAAGACAGCGCCTGGAAAATGGAGCAGACGTGGACGAG AGATTATTTAGCAGAAGATGATGGGGAGATGGTACCCAGAACAAGTCACACAGCAGCTTT TCTTAGTGACACTAAAGATCGAGGTCCTCCAGTACAGTCACAGACCTGGAGAAGTGGTGA AAAGGTCCCCTTTGGGCATTCCTTGAGAACATTTGAAAGACCCCTTCAGGTGCAGACCCA GGCTCTTCGAGACTTTGAGAAGCACCTCAATGACCTGAAGAAGGAGAACTTCAGCCTCAA GCTGCGCATCTACTTCCTGGAGGAGCGCATGCAGCAGAAGTATGAGGCCAGCCGGGACGA CATCTACAAGCGGAACATCGAGCTGAAGGTTGAAGTAGAGAGCCTGAAACGAGAACTCCA GGGCAAGAAACAGCATCTGGAAAAAACATGCGCTGATGTGGAGAATCTCAACAGCCATAA TGAAGCTGAGCTCCGGCGCCAGTTTGAGGAGAGACAGCAGGAGACGGAGCATGTTTACGA GCTCCTGGAGAATAAGATCCAGCTTCTGCAGGAGGAATCCAGGCTAGCAAAAAATGAAGC CGCCCGGATGGCGGCTCTGGTGGAAGCAGAGAAAGAGTGTAACCTGGAGCTCTCAGAGAA ACTGAAGGGAGTCACCAAGGACAGAGAAGATGTGCCAGGAGACCTGGTCAGGCCCAACCA GTACACTGAGGCCCTGGCGCAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCTTGTGTCCGTTCGCTGGAGGTTTGGCCACGTCAAATCGGTTTTCTCAAAAAGCAG GGAGCGGACCTCTCTCCTCACAGCTAACACAGACAGAAAAGGGAGCTGGGGAGGAAAAGG CTCTTTGCGCTGGAGATTCCTGGGCCAGGCTTCTCATTTTCCCAGGCTGCTTCCTCTCCC GGGTGAGGGGCGCCCTGCGAGTAAAGACAGCGCCTGGAAAATGGAGCAGACGTGGACGAG AGATTATTTAGCAGAAGATGATGGGGAGATGGTACCCAGAACAAGTCACACAGCAGCTTT TCTTAGTGACACTAAAGATCGAGGTCCTCCAGTACAGTCACAGACCTGGAGAAGTGGTGA AAAGGTCCCCTTTGGGCATTCCTTGAGAACATTTGAAAGACCCCTTCAGGTGCAGACCCA GGCTCTTCGAGACTTTGAGAAGCACCTCAATGACCTGAAGAAGGAGAACTTCAGCCTCAA GCTGCGCATCTACTTCCTGGAGGAGCGCATGCAGCAGAAGTATGAGGCCAGCCGGGACGA CATCTACAAGCGGAACATCGAGCTGAAGGTTGAAGTAGAGAGCCTGAAACGAGAACTCCA GGGCAAGAAACAGCATCTGGAAAAAACATGCGCTGATGTGGAGAATCTCAACAGCCATAA TGAAGCTGAGCTCCGGCGCCAGTTTGAGGAGAGACAGCAGGAGACGGAGCATGTTTACGA GCTCCTGGAGAATAAGATCCAGCTTCTGCAGGAGGAATCCAGGCTAGCAAAAAATGAAGC CGCCCGGATGGCGGCTCTGGTGGAAGCAGAGAAAGAGTGTAACCTGGAGCTCTCAGAGAA ACTGAAGGGAGTCACCAAGGACAGAGAAGATGTGCCAGGAGACCTGGTCAGGCCCAACCA GTACACTGAGGCCCTGGCGCAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 753-912, + strand, RNAz p=0.994176 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 753-912, + strand, RNAz p=0.994176 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 14-237, gnl|bosTau2|chr3 (18166945-18166727) | |
| 14-237, gnl|canFam2|chr17 (60250152-60249244) | |
| 14-237, gnl|echTel1|scaffold_323307 (4639-3667) | |
| 14-237, gnl|hg17|chr1 (142528156-142529157) | |
| 14-237, gnl|Hg17|chr1 (142528860-142528637) | |
| 14-237, gnl|loxAfr1|scaffold_19175 (7624-6557) | |
| 14-237, gnl|mm7|chr3 (97738738-97739671) | |
| 14-237, gnl|Mm7|chr3 (97739435-97739199) | |
| 14-237, gnl|monDom2|scaffold_44 (677428-676338) | |
| 14-237, gnl|oryCun1|scaffold_213369 (40354-39352) | |
| 14-237, gnl|panTro1|chr1_random (16213978-16214980) | |
| 14-237, gnl|rheMac2|chr1 (123153487-123152485) | |
| 14-237, gnl|rn3|chr2 (192673500-192674430) | |
| 293-442, gnl|bosTau2|chr3 (18139656-18139507) | |
| 293-442, gnl|Hg17|chr1 (142505059-142504904) | |
| 293-442, gnl|Mm7|chr3 (97713080-97712925) | |
| 753-923, gnl|bosTau2|chr3 (18053193-18053023) | |
| 753-923, gnl|canFam2|chr17 (60327896-60327755) | |
| 753-923, gnl|echTel1|scaffold_323692 (34213-34354) | |
| 753-923, gnl|hg17|chr1 (142441223-142441364) | |
| 753-923, gnl|Hg17|chr1 (142441422-142441252) | |
| 753-923, gnl|loxAfr1|scaffold_86398 (9008-9149) | |
| 753-923, gnl|mm7|chr3 (97664414-97664555) | |
| 753-923, gnl|Mm7|chr3 (97664613-97664443) | |
| 753-923, gnl|monDom2|scaffold_44 (810260-810119) | |
| 753-923, gnl|oryCun1|scaffold_213369 (126947-126806) | |
| 753-923, gnl|panTro1|chr1_random (15332711-15332570) | |
| 753-923, gnl|rheMac2|chr1 (123246203-123246062) | |
| 753-923, gnl|rn3|chr2 (192598512-192598656) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-237, gnl|bosTau2|chr3 (18166945-18166727) | |
| 14-237, gnl|canFam2|chr17 (60250152-60249244) | |
| 14-237, gnl|echTel1|scaffold_323307 (4639-3667) | |
| 14-237, gnl|hg17|chr1 (142528156-142529157) | |
| 14-237, gnl|Hg17|chr1 (142528860-142528637) | |
| 14-237, gnl|loxAfr1|scaffold_19175 (7624-6557) | |
| 14-237, gnl|mm7|chr3 (97738738-97739671) | |
| 14-237, gnl|Mm7|chr3 (97739435-97739199) | |
| 14-237, gnl|monDom2|scaffold_44 (677428-676338) | |
| 14-237, gnl|oryCun1|scaffold_213369 (40354-39352) | |
| 14-237, gnl|panTro1|chr1_random (16213978-16214980) | |
| 14-237, gnl|rheMac2|chr1 (123153487-123152485) | |
| 14-237, gnl|rn3|chr2 (192673500-192674430) | |
| 293-442, gnl|bosTau2|chr3 (18139656-18139507) | |
| 293-442, gnl|Hg17|chr1 (142505059-142504904) | |
| 293-442, gnl|Mm7|chr3 (97713080-97712925) | |
| 753-923, gnl|bosTau2|chr3 (18053193-18053023) | |
| 753-923, gnl|canFam2|chr17 (60327896-60327755) | |
| 753-923, gnl|echTel1|scaffold_323692 (34213-34354) | |
| 753-923, gnl|hg17|chr1 (142441223-142441364) | |
| 753-923, gnl|Hg17|chr1 (142441422-142441252) | |
| 753-923, gnl|loxAfr1|scaffold_86398 (9008-9149) | |
| 753-923, gnl|mm7|chr3 (97664414-97664555) | |
| 753-923, gnl|Mm7|chr3 (97664613-97664443) | |
| 753-923, gnl|monDom2|scaffold_44 (810260-810119) | |
| 753-923, gnl|oryCun1|scaffold_213369 (126947-126806) | |
| 753-923, gnl|panTro1|chr1_random (15332711-15332570) | |
| 753-923, gnl|rheMac2|chr1 (123246203-123246062) | |
| 753-923, gnl|rn3|chr2 (192598512-192598656) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ctl (0.153069) |