Non-Coding RNA Search

Ss1.1-Pig3-SRG8004B15.5

Sequence:


               
               GAAGGAGGGGGAAGGGTGATCCCTAAGATGGAAAACATCGAGGTTGTTGCCGAAACTCAT
CCTCTGCCCGACGCTGCGGAATAGGAACACAGAGACGGAGTTTGGGGTGAAGGAGAAAAA
GATAGCTTTATGGTTTTGCCACGCAAAGGGGGGCACAGCAGGCTCATGTGTTAAAGACTG
TCCCCACCTTGGGAGAGATTAAGAGGTGGTTTTCTAGTTTGGGGAGTGGAAAATAGGGCC
GCAGATAAGGATCAGAGGAGAGGCAAGCGTGCATTGTTTCTCGAAATTGGTGTTTAGTGG
ACCCAGGACTGGTTCTGGTGGTCCTCCTTCTTCCAGGAATGAAGAATGCTTCAACAGTTC
TTCCATTTGTAGGGGGTTTTAGTTCTGCAGAAAGGCTCTAAGCTATTGTTATGTGTATCC
CATGAGGAGGAACCAGGACTCTGCTCCAAGGCTGCACTATGGTCTCTGGTCGGCTCCTCC
CTGGTCTCTGCATCCCCTCCCTTCCCTGATTAGCTACTGCCCTTTGGAACTCAGCAAACA
CCATGGAGGCTGAAGCTTATCCCCTAATAACAAGAAGTGGAGGGCAGAGAAAGTCTTTTA
GTGCCTAGGAGCCCCAGAGGGCACTAGCTGGGTTACAAGGTGACCCTGAAATCCCTACAG
CCCATTGTCTTGAGTTTCAGACCACAGGGTGGGGGAGGGGAACTGAGGCAGAGGGCCTCC
TAACAAGTGCTCTATACAATAAAGTCTAAATAGCAATTTTTTTTTTTTAAATTATAACCT
CATTAGTATTAACACAGTTATAAACAGCTCTTTTAAAAGGCAGAGAGATTGTATGCTGGG
GTAAAAAGAAAAGCTCTAACTATATGCTATCTGCAAGAAACCCATCCCTTTGAAAGTAAA
GAATGCTCAACACAGTGGGGTACCCGCAATTGTACTGTGGCACATAAAGGAGACCTTACC
GCGGTGAAATTCAAATAAAGTCTGCAGTTAATAGTAATGTGCCAATTTTGGTGCCTCAGT
TTTAAGAAACACACTACAGTAATGTGAGGCGATGGTGTTAGGGGCTTTGGTACAGGATTG
GTAGGACTCTGAAATATCTTTGCAATATTTCTGTAAACCTAAAATTACTCTAAAACAAAA
TGTTTAATTAAAAAAAGATTACCTCTGCTGAAAGTAACAGAATGACGTGGGGTTATCAAC
AGAAAAGTTTACAATAGACTATGGGAAGGAAATTGCAACTTCTCAAGTATCACTTACAGT
GACAGGTCCCTGAACTGGACTGGATAATTTTATCAGAGTCGTGGAAAGAGCTGGCATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGAGGGGGAAGGGTGATCCCTAAGATGGAAAACATCGAGGTTGTTGCCGAAACTCAT
CCTCTGCCCGACGCTGCGGAATAGGAACACAGAGACGGAGTTTGGGGTGAAGGAGAAAAA
GATAGCTTTATGGTTTTGCCACGCAAAGGGGGGCACAGCAGGCTCATGTGTTAAAGACTG
TCCCCACCTTGGGAGAGATTAAGAGGTGGTTTTCTAGTTTGGGGAGTGGAAAATAGGGCC
GCAGATAAGGATCAGAGGAGAGGCAAGCGTGCATTGTTTCTCGAAATTGGTGTTTAGTGG
ACCCAGGACTGGTTCTGGTGGTCCTCCTTCTTCCAGGAATGAAGAATGCTTCAACAGTTC
TTCCATTTGTAGGGGGTTTTAGTTCTGCAGAAAGGCTCTAAGCTATTGTTATGTGTATCC
CATGAGGAGGAACCAGGACTCTGCTCCAAGGCTGCACTATGGTCTCTGGTCGGCTCCTCC
CTGGTCTCTGCATCCCCTCCCTTCCCTGATTAGCTACTGCCCTTTGGAACTCAGCAAACA
CCATGGAGGCTGAAGCTTATCCCCTAATAACAAGAAGTGGAGGGCAGAGAAAGTCTTTTA
GTGCCTAGGAGCCCCAGAGGGCACTAGCTGGGTTACAAGGTGACCCTGAAATCCCTACAG
CCCATTGTCTTGAGTTTCAGACCACAGGGTGGGGGAGGGGAACTGAGGCAGAGGGCCTCC
TAACAAGTGCTCTATACAATAAAGTCTAAATAGCAATTTTTTTTTTTTAAATTATAACCT
CATTAGTATTAACACAGTTATAAACAGCTCTTTTAAAAGGCAGAGAGATTGTATGCTGGG
GTAAAAAGAAAAGCTCTAACTATATGCTATCTGCAAGAAACCCATCCCTTTGAAAGTAAA
GAATGCTCAACACAGTGGGGTACCCGCAATTGTACTGTGGCACATAAAGGAGACCTTACC
GCGGTGAAATTCAAATAAAGTCTGCAGTTAATAGTAATGTGCCAATTTTGGTGCCTCAGT
TTTAAGAAACACACTACAGTAATGTGAGGCGATGGTGTTAGGGGCTTTGGTACAGGATTG
GTAGGACTCTGAAATATCTTTGCAATATTTCTGTAAACCTAAAATTACTCTAAAACAAAA
TGTTTAATTAAAAAAAGATTACCTCTGCTGAAAGTAACAGAATGACGTGGGGTTATCAAC
AGAAAAGTTTACAATAGACTATGGGAAGGAAATTGCAACTTCTCAAGTATCACTTACAGT
GACAGGTCCCTGAACTGGACTGGATAATTTTATCAGAGTCGTGGAAAGAGCTGGCATACT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               333-637, gnl|bosTau2|chr11 (39243070-39242762)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               333-637, gnl|bosTau2|chr11 (39243070-39242762)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               cst (0.140036)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               cst (0.140036)