Ss1.1-Pig3-SRG8004C16.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTTGGCCCGCGGAGCCGGCGCCGAATCCCGCGGCCTCAGCTGCAGCCGCGCCTTCTCT CTGCTCCGCCACCAGCCGGGGCTCGGGCCGGTGCCCGGGCCCCCGGGACATGGCCCTCCG GAGTGCGCAGGGTGACGGCCCCACGTCTCCTCGCTGGGACGGCGGCGCGGAGAAGGCAGA CTTTAATGCCAAAAAGAAAAAGAAAGTGGCAGAGATCTACCAGGCTCTGAACAGTGACCC CACCGATGTGGCTGCCCTTAGACGCATGGCTATCAGTGAAGGAGGGCTGCTGACTGATGA GATCAGACGGAAAGTGTGGCCCAAGCTCCTCAATGTCAACACCAGTGATCCACCTCCTAC ATCAGGGAAGAACCTGCGACAGCTGAGCAAGGACTACCAGCAAGTGCTGCTGGATGTCCG GCGGTCTCTACGGCGGTTCCCTCCTGGCATGCCAGAAGAGCAGAGGGAAGGGCTGCAGGA AGAGCTGATCGACATCATCCTCCTCATCCTGGAGCGCAACCCTCAGCTGCACTACTACCA GGGCTACCACGACATCGTGGTCACGTTTCTGCTGGTGGTAGGCGAGAGGCTGGCCACATC CCTGGTGGAAAAATTGTCTACCCACCACCTCAGGGATTTCATGGACCCAACAATGGACAA CACCAAGCATATATTAAACTATCTGATGCCCATCATTGACCAGGTGAATCCAGAACTCCA TGACTTCATGCAGAGTGCTGAGGTGGGGACCATCTTTGCGCTCAGCTGGCTCATCACCTG GTTTGGGCACGTCCTGTCAGACTTCAGGCACGTCGTGCGGTTATACGACTTCTTCCTGGC CTGCCACCCGCTGATGCCCATTTACTTTGCAGCTGTGATCGTGTTGTATCGAGAGCAGGA AGTCCTGGACTGTGACTGTGACATGGCCTCGGTCCACCACCTGTTGTCCCAGATCCCTCA GGACCTGCCCTATGAGACGCTGATCAGTAGAGCAGGAGACCTCTTTGTGCAGTTTCCCCC GTCCGAACTTGCTCGGGAGGCAGCTGCCCAGCAGCAGGCCGAGAGAACGGCAGCCTCTAC CTTCAAAGACTTTGAGCTGGCATCAGCCCAGCAGAGGCCTGACATGGTGCTGAGGCAGCG GTTTCGGGGACTTCTGCGGCCTGAGGATCGAACAAAAGATGTCCTGACCAAACCAAGGAC CAACCGCTTTGTGAAGCTGGCGGTGATGGGGCTGACGGTGGCACTTGGAGCGGCTGCTCT GGCTGTGGTGAAGAGTGCCCTGGAGTGGGCCCCAAAGTTTCAACTGCAGCTGTTTCCCTA AATGCCAGAGAAGACACTTCCTCTAACATGACATCAAGGTCTCACCCTTCCATGGACCGA CTGGGAGGGGGTGGAATTTCCTTTATTAAAAGGGTTTCTGTCGAGGGTTTTCTATTCCTG CCACCCTTCCCCCCACCCCATCCATGGTTGCCTTTGCTTCAGAGGCCAATTGCAGAGCCT GTGTGACGCGGGCACCTGGGGGCCTGAGCACAGAACTCTTTCTCACTCACAGTGGGCTTC TGAGCGGGCGCTCCACGGCCTCCTCTTGTATTGGAGGGAATGGGTTTCTGTAGCTCACAG CTGCCTTTGGAACCCACTGGGCCTGGTCACCGGGGGGCATCTTAGCTGGACCACTGAATG CCCTTCTGGCGGCTCCTTCTATCCGTCCTGTCTGCTTCAGCTGGACAAAGAAGTCAGACC TTGGAGTGAAGGCGAGGGGGCAGAGGAGACTAGCCCGGGAGCAAGATTGGCCCCTTCTGA GAATAGCTCCACTAGCTGGTCAGAAATCTAAGCGACATATGTGAACTAGGTTACTCGGTA AATCTTATTTTCAGCCTAGAACTCACTTGGGTGTTTCCAGTCAGACAAAAAGGAATGTTA AGTTTTAGGGCCCAGACATCAGCTGGCTTTGCCTTTTTTTTTTCTTTCTATTCTCTTCCA CAAGCCACACAATGATGCTTATAAAAGACACTTTTACTACTATTTTTAGAACTACATACA TCCAACATGTAAAGTGCTACTATTTTTAGAATTATATACAGCCAACATGTAAAGTACCCT CACTTTTAAATAGTTCCTTCTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTTGGCCCGCGGAGCCGGCGCCGAATCCCGCGGCCTCAGCTGCAGCCGCGCCTTCTCT CTGCTCCGCCACCAGCCGGGGCTCGGGCCGGTGCCCGGGCCCCCGGGACATGGCCCTCCG GAGTGCGCAGGGTGACGGCCCCACGTCTCCTCGCTGGGACGGCGGCGCGGAGAAGGCAGA CTTTAATGCCAAAAAGAAAAAGAAAGTGGCAGAGATCTACCAGGCTCTGAACAGTGACCC CACCGATGTGGCTGCCCTTAGACGCATGGCTATCAGTGAAGGAGGGCTGCTGACTGATGA GATCAGACGGAAAGTGTGGCCCAAGCTCCTCAATGTCAACACCAGTGATCCACCTCCTAC ATCAGGGAAGAACCTGCGACAGCTGAGCAAGGACTACCAGCAAGTGCTGCTGGATGTCCG GCGGTCTCTACGGCGGTTCCCTCCTGGCATGCCAGAAGAGCAGAGGGAAGGGCTGCAGGA AGAGCTGATCGACATCATCCTCCTCATCCTGGAGCGCAACCCTCAGCTGCACTACTACCA GGGCTACCACGACATCGTGGTCACGTTTCTGCTGGTGGTAGGCGAGAGGCTGGCCACATC CCTGGTGGAAAAATTGTCTACCCACCACCTCAGGGATTTCATGGACCCAACAATGGACAA CACCAAGCATATATTAAACTATCTGATGCCCATCATTGACCAGGTGAATCCAGAACTCCA TGACTTCATGCAGAGTGCTGAGGTGGGGACCATCTTTGCGCTCAGCTGGCTCATCACCTG GTTTGGGCACGTCCTGTCAGACTTCAGGCACGTCGTGCGGTTATACGACTTCTTCCTGGC CTGCCACCCGCTGATGCCCATTTACTTTGCAGCTGTGATCGTGTTGTATCGAGAGCAGGA AGTCCTGGACTGTGACTGTGACATGGCCTCGGTCCACCACCTGTTGTCCCAGATCCCTCA GGACCTGCCCTATGAGACGCTGATCAGTAGAGCAGGAGACCTCTTTGTGCAGTTTCCCCC GTCCGAACTTGCTCGGGAGGCAGCTGCCCAGCAGCAGGCCGAGAGAACGGCAGCCTCTAC CTTCAAAGACTTTGAGCTGGCATCAGCCCAGCAGAGGCCTGACATGGTGCTGAGGCAGCG GTTTCGGGGACTTCTGCGGCCTGAGGATCGAACAAAAGATGTCCTGACCAAACCAAGGAC CAACCGCTTTGTGAAGCTGGCGGTGATGGGGCTGACGGTGGCACTTGGAGCGGCTGCTCT GGCTGTGGTGAAGAGTGCCCTGGAGTGGGCCCCAAAGTTTCAACTGCAGCTGTTTCCCTA AATGCCAGAGAAGACACTTCCTCTAACATGACATCAAGGTCTCACCCTTCCATGGACCGA CTGGGAGGGGGTGGAATTTCCTTTATTAAAAGGGTTTCTGTCGAGGGTTTTCTATTCCTG CCACCCTTCCCCCCACCCCATCCATGGTTGCCTTTGCTTCAGAGGCCAATTGCAGAGCCT GTGTGACGCGGGCACCTGGGGGCCTGAGCACAGAACTCTTTCTCACTCACAGTGGGCTTC TGAGCGGGCGCTCCACGGCCTCCTCTTGTATTGGAGGGAATGGGTTTCTGTAGCTCACAG CTGCCTTTGGAACCCACTGGGCCTGGTCACCGGGGGGCATCTTAGCTGGACCACTGAATG CCCTTCTGGCGGCTCCTTCTATCCGTCCTGTCTGCTTCAGCTGGACAAAGAAGTCAGACC TTGGAGTGAAGGCGAGGGGGCAGAGGAGACTAGCCCGGGAGCAAGATTGGCCCCTTCTGA GAATAGCTCCACTAGCTGGTCAGAAATCTAAGCGACATATGTGAACTAGGTTACTCGGTA AATCTTATTTTCAGCCTAGAACTCACTTGGGTGTTTCCAGTCAGACAAAAAGGAATGTTA AGTTTTAGGGCCCAGACATCAGCTGGCTTTGCCTTTTTTTTTTCTTTCTATTCTCTTCCA CAAGCCACACAATGATGCTTATAAAAGACACTTTTACTACTATTTTTAGAACTACATACA TCCAACATGTAAAGTGCTACTATTTTTAGAATTATATACAGCCAACATGTAAAGTACCCT CACTTTTAAATAGTTCCTTCTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 443-562, - strand, RNAz p=0.890227 | |
| 517-1459, + strand, RNAz p=0.931563 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 443-562, - strand, RNAz p=0.890227 | |
| 517-1459, + strand, RNAz p=0.931563 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK055488, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 176-366, gnl|bosTau2|chr13 (41837546-41837736) | |
| 176-366, gnl|Hg17|chr20 (376722-376532) | |
| 176-366, gnl|Mm7|chr2 (152043005-152043195) | |
| 443-634, gnl|bosTau2|chr13 (41925093-41924902) | |
| 443-634, gnl|canFam2|chr24 (23385273-23385067) | |
| 443-634, gnl|danRer3|chr22 (8848903-8848699) | |
| 443-634, gnl|dasNov1|scaffold_61948 (3479-3683) | |
| 443-634, gnl|echTel1|scaffold_317620 (46924-47128) | |
| 443-634, gnl|fr1|chrUn (174388974-174389178) | |
| 443-634, gnl|galGal2|chr20 (9548426-9548220) | |
| 443-634, gnl|hg17|chr20 (370497-370703) | |
| 443-634, gnl|Hg17|chr20 (370691-370500) | |
| 443-634, gnl|loxAfr1|scaffold_9224 (6457-6663) | |
| 443-634, gnl|mm7|chr2 (152049038-152048837) | |
| 443-634, gnl|Mm7|chr2 (152048844-152049033) | |
| 443-634, gnl|monDom2|scaffold_38 (2516899-2517105) | |
| 443-634, gnl|panTro1|chr21 (445636-445842) | |
| 443-634, gnl|rheMac2|chr10 (33692305-33692511) | |
| 443-634, gnl|rn3|chr3 (142542029-142541828) | |
| 443-634, gnl|tetNig1|chr11 (3359314-3359507) | |
| 443-634, gnl|xenTro1|scaffold_1725 (26246-26051) | |
| 734-877, gnl|bosTau2|chr13 (41923721-41923578) | |
| 734-877, gnl|Hg17|chr20 (369035-368892) | |
| 734-877, gnl|Mm7|chr2 (152051241-152051384) | |
| 1064-2076, gnl|bosTau2|chr13 (41922329-41921286) | |
| 1064-2076, gnl|Hg17|chr20 (367487-366435) | |
| 1064-2076, gnl|Mm7|chr2 (152052565-152053612) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 176-366, gnl|bosTau2|chr13 (41837546-41837736) | |
| 176-366, gnl|Hg17|chr20 (376722-376532) | |
| 176-366, gnl|Mm7|chr2 (152043005-152043195) | |
| 443-634, gnl|bosTau2|chr13 (41925093-41924902) | |
| 443-634, gnl|canFam2|chr24 (23385273-23385067) | |
| 443-634, gnl|danRer3|chr22 (8848903-8848699) | |
| 443-634, gnl|dasNov1|scaffold_61948 (3479-3683) | |
| 443-634, gnl|echTel1|scaffold_317620 (46924-47128) | |
| 443-634, gnl|fr1|chrUn (174388974-174389178) | |
| 443-634, gnl|galGal2|chr20 (9548426-9548220) | |
| 443-634, gnl|hg17|chr20 (370497-370703) | |
| 443-634, gnl|Hg17|chr20 (370691-370500) | |
| 443-634, gnl|loxAfr1|scaffold_9224 (6457-6663) | |
| 443-634, gnl|mm7|chr2 (152049038-152048837) | |
| 443-634, gnl|Mm7|chr2 (152048844-152049033) | |
| 443-634, gnl|monDom2|scaffold_38 (2516899-2517105) | |
| 443-634, gnl|panTro1|chr21 (445636-445842) | |
| 443-634, gnl|rheMac2|chr10 (33692305-33692511) | |
| 443-634, gnl|rn3|chr3 (142542029-142541828) | |
| 443-634, gnl|tetNig1|chr11 (3359314-3359507) | |
| 443-634, gnl|xenTro1|scaffold_1725 (26246-26051) | |
| 734-877, gnl|bosTau2|chr13 (41923721-41923578) | |
| 734-877, gnl|Hg17|chr20 (369035-368892) | |
| 734-877, gnl|Mm7|chr2 (152051241-152051384) | |
| 1064-2076, gnl|bosTau2|chr13 (41922329-41921286) | |
| 1064-2076, gnl|Hg17|chr20 (367487-366435) | |
| 1064-2076, gnl|Mm7|chr2 (152052565-152053612) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| med (0.465008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mga (0.160205) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.465008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| mga (0.160205) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) |