Non-Coding RNA Search

Ss1.1-Pig3-SRG8004C19.3

Sequence:


               
               GAAGCTCCACCCTCCAAGTCTGTTATAAATAGTATGCTGCGGGACCCTTCTCAGATTCCA
GATGGAGTTCTAGCAAATCAGGTCTATCAGTGCATCGTGAATGACTGCTGTTATGGACCA
CTGGTGGACTGCATCAAACATGCCATTGGTCATGAGCATGAAGTCCTGCTGAGGGACTTG
CTTCTGGAGAAAAACCTATCCTTCCTAGATGAAGATCAGCTTCGTGCAAGAGGTTATGAC
AAAACGCCAGACTTTATTTTACAAGTACCAGTTGGTAAGTCCTTAGACTCTACTCTGCAT
TTGTTTATAAAGCGATGTGTTTTTTCCCATAGCTTTTAAAATTTTTGTTAATATTAACAA
ATGTTCCCAAAGAATCTGTATTAGCTTGATAATTTTGTATTCAAATGTGTGAAATAATTG
CAAAAGATTTTTAATTGGCAGAAAATAATAGGTTCAGAAGAAACCTAAGCTTTAAAAACT
TTTACCTATGTTTAAGAAATAAGCATGTCTTCAAAAGACATTTTGGTTACCATTTTCAAG
TCATTTCTCTGTATATTCATTTTTAAAACAGAGTTCTGTGGAAAAGCCAGGATCACTTTG
GTTTGCTTTTGTATTGTCAGTTTATACAGGCAATCTCAGAATAGGAGGGAGACTTTTGTA
AATGACAAAAATAAAAGGGATGTGACTGTAGCATAAACATTCCTTGTCACAAACAGGTAC
GATGTGTTGTTTTATAATTACATCCCTACATGACGGTCCTGCTAAGAGATTTGCTTCTGG
AGAAAAACCTGTCCTTCCTTGATGAAGATCAGCTCCGTGCAAAGGGTTATGACAAAACTC
CAGACTTTATTTTACAAGTACCCGTTGCTGTAGAAGGGCACATAATTCACTGGATTGAAA
GCAAAGCTTCATTTGGTGATGAATGTAGCCACCACGCCTACCTGCATGACCAGTTCTGGA
GCTACTGGAATAGGTTTGGACCAGGTTTAGTCATCTACTGGTATGGATTTATCCAGGAGC
TGGACTGTAACCGGGAGAGAGGCATCTTGCTCCAAGCCTGTTTTCCCACCGACATCGTCA
CCTTATGCCATAACGTAGCTTGACCCCAATGATCCTGGAAGAGAAGCCGGGAGGAAAAGG
TGAATCCGGAAGCAATTTTACTTTCCTGCCACGTAAACTCCTGGCAACATCTGCCCTGAA
CTTCAGCTGAACTCTCACTGCCCATGGTCACACCACTACCTCTTTAGACAAACATATCAA
GAGTTTCTGTTTTCCTTCATCCGTTGCTGATGTGAACAGCCAAGTACTACAGACACAACC
CACTCATTATCAGCATTTCTGTCTCTGTCAAACAGTTAGTTTATAGATAGTCATAATCTT
TCTTCCTTCCGGATGGTTTCTCCTTATATACTGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGCTCCACCCTCCAAGTCTGTTATAAATAGTATGCTGCGGGACCCTTCTCAGATTCCA
GATGGAGTTCTAGCAAATCAGGTCTATCAGTGCATCGTGAATGACTGCTGTTATGGACCA
CTGGTGGACTGCATCAAACATGCCATTGGTCATGAGCATGAAGTCCTGCTGAGGGACTTG
CTTCTGGAGAAAAACCTATCCTTCCTAGATGAAGATCAGCTTCGTGCAAGAGGTTATGAC
AAAACGCCAGACTTTATTTTACAAGTACCAGTTGGTAAGTCCTTAGACTCTACTCTGCAT
TTGTTTATAAAGCGATGTGTTTTTTCCCATAGCTTTTAAAATTTTTGTTAATATTAACAA
ATGTTCCCAAAGAATCTGTATTAGCTTGATAATTTTGTATTCAAATGTGTGAAATAATTG
CAAAAGATTTTTAATTGGCAGAAAATAATAGGTTCAGAAGAAACCTAAGCTTTAAAAACT
TTTACCTATGTTTAAGAAATAAGCATGTCTTCAAAAGACATTTTGGTTACCATTTTCAAG
TCATTTCTCTGTATATTCATTTTTAAAACAGAGTTCTGTGGAAAAGCCAGGATCACTTTG
GTTTGCTTTTGTATTGTCAGTTTATACAGGCAATCTCAGAATAGGAGGGAGACTTTTGTA
AATGACAAAAATAAAAGGGATGTGACTGTAGCATAAACATTCCTTGTCACAAACAGGTAC
GATGTGTTGTTTTATAATTACATCCCTACATGACGGTCCTGCTAAGAGATTTGCTTCTGG
AGAAAAACCTGTCCTTCCTTGATGAAGATCAGCTCCGTGCAAAGGGTTATGACAAAACTC
CAGACTTTATTTTACAAGTACCCGTTGCTGTAGAAGGGCACATAATTCACTGGATTGAAA
GCAAAGCTTCATTTGGTGATGAATGTAGCCACCACGCCTACCTGCATGACCAGTTCTGGA
GCTACTGGAATAGGTTTGGACCAGGTTTAGTCATCTACTGGTATGGATTTATCCAGGAGC
TGGACTGTAACCGGGAGAGAGGCATCTTGCTCCAAGCCTGTTTTCCCACCGACATCGTCA
CCTTATGCCATAACGTAGCTTGACCCCAATGATCCTGGAAGAGAAGCCGGGAGGAAAAGG
TGAATCCGGAAGCAATTTTACTTTCCTGCCACGTAAACTCCTGGCAACATCTGCCCTGAA
CTTCAGCTGAACTCTCACTGCCCATGGTCACACCACTACCTCTTTAGACAAACATATCAA
GAGTTTCTGTTTTCCTTCATCCGTTGCTGATGTGAACAGCCAAGTACTACAGACACAACC
CACTCATTATCAGCATTTCTGTCTCTGTCAAACAGTTAGTTTATAGATAGTCATAATCTT
TCTTCCTTCCGGATGGTTTCTCCTTATATACTGAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14210512|ref|NP_115888.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14210512|ref|NP_115888.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               972-1416, gnl|bosTau2|chr10 (18472860-18473304)
               

               
               972-1416, gnl|Hg17|chr15 (34887815-34888259)
               

               
               972-1416, gnl|Mm7|chr2 (115517748-115518167)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               972-1416, gnl|bosTau2|chr10 (18472860-18473304)
               

               
               972-1416, gnl|Hg17|chr15 (34887815-34888259)
               

               
               972-1416, gnl|Mm7|chr2 (115517748-115518167)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.20816)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	972-1416, gnl\|bosTau2\|chr10 (18472860-18473304)
	972-1416, gnl\|Hg17\|chr15 (34887815-34888259)
	972-1416, gnl\|Mm7\|chr2 (115517748-115518167)