Ss1.1-Pig3-SRG8004C21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTCCTGGAGAGTGTGGTGAAGCTGCGCTTGCGGTTCAGCCCGAAAACAAGTCCCGGGA GAGATCGGTGGCGCAGGGAGTCTCGGCTAGCTGGATAGCAGGCGTCCGCCCAGCGGCCAG TGAATGTTTGTTTGCTGCTACTAATGGGTGTGAGCAAGTTAGATATTCTATACCGGAGAC TTCTCCTTACAAAACTTTTTATCAGAGGATGGGGAAGACCAGAGGATCTCAAAAGACTCT TTGAATTCAGAAAGATGATTGGAAATCGAGAAAGATGTCAGAATCTGGTTTCAAGTGATT ATCCAGTTTACATCGATAAGATTGAAGAGCAATCAGACTGTAAGATCCTAGATGGACACT TTGTTTCCCCAATGGCCCATTATGTGCCCGATATCATGCCAGTTGAATCTGTTATTGCAA GGTTCCAATTTATTGTGCCTAAAGAATGGAACAGCAAATATAGACCTGTCTGCATTCATC TTGCTGGAACAGGAGATCATCATTACTGGAGACGACGAACACTAATGGCTCGTCCTATGA TTAAAGAGGCCCGAATGGCTTCTTTACTGTTAGAAAACCCTTATTGATGACGTCAGACTA TTCCCACAAGAAGAAATGAAAGTGATGCACAGATATAAAGAAATGTTCAGCGTTGCTGGT AATAAGAGAAATGTAAACTTAAAGCAACAATTACAAAGATTTAAAAAATAAAACACAGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTCCTGGAGAGTGTGGTGAAGCTGCGCTTGCGGTTCAGCCCGAAAACAAGTCCCGGGA GAGATCGGTGGCGCAGGGAGTCTCGGCTAGCTGGATAGCAGGCGTCCGCCCAGCGGCCAG TGAATGTTTGTTTGCTGCTACTAATGGGTGTGAGCAAGTTAGATATTCTATACCGGAGAC TTCTCCTTACAAAACTTTTTATCAGAGGATGGGGAAGACCAGAGGATCTCAAAAGACTCT TTGAATTCAGAAAGATGATTGGAAATCGAGAAAGATGTCAGAATCTGGTTTCAAGTGATT ATCCAGTTTACATCGATAAGATTGAAGAGCAATCAGACTGTAAGATCCTAGATGGACACT TTGTTTCCCCAATGGCCCATTATGTGCCCGATATCATGCCAGTTGAATCTGTTATTGCAA GGTTCCAATTTATTGTGCCTAAAGAATGGAACAGCAAATATAGACCTGTCTGCATTCATC TTGCTGGAACAGGAGATCATCATTACTGGAGACGACGAACACTAATGGCTCGTCCTATGA TTAAAGAGGCCCGAATGGCTTCTTTACTGTTAGAAAACCCTTATTGATGACGTCAGACTA TTCCCACAAGAAGAAATGAAAGTGATGCACAGATATAAAGAAATGTTCAGCGTTGCTGGT AATAAGAGAAATGTAAACTTAAAGCAACAATTACAAAGATTTAAAAAATAAAACACAGTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 129-235, gnl|bosTau2|chr17 (18668378-18668485) | |
| 129-235, gnl|canFam2|chr19 (15974570-15974435) | |
| 129-235, gnl|danRer3|chrUn (11318647-11318770) | |
| 129-235, gnl|dasNov1|scaffold_51561 (156-291) | |
| 129-235, gnl|fr1|chrUn (108548348-108548479) | |
| 129-235, gnl|hg17|chr4 (129261676-129261811) | |
| 129-235, gnl|Hg17|chr4 (129261700-129261807) | |
| 129-235, gnl|loxAfr1|scaffold_92871 (948-1083) | |
| 129-235, gnl|mm7|chr3 (40679252-40679385) | |
| 129-235, gnl|Mm7|chr3 (40679275-40679381) | |
| 129-235, gnl|oryCun1|scaffold_206658 (29695-29564) | |
| 129-235, gnl|panTro1|chr3 (146114703-146114838) | |
| 129-235, gnl|rheMac2|chr5 (120302296-120302430) | |
| 129-235, gnl|rn3|chr2 (127782728-127782861) | |
| 129-235, gnl|tetNig1|chrUn_random (120877014-120877140) | |
| 319-431, gnl|bosTau2|chr17 (18671900-18672012) | |
| 319-431, gnl|canFam2|chr19 (15969215-15968974) | |
| 319-431, gnl|dasNov1|scaffold_51561 (5100-5333) | |
| 319-431, gnl|echTel1|scaffold_271120 (8322-8541) | |
| 319-431, gnl|hg17|chr4 (129268386-129268624) | |
| 319-431, gnl|Hg17|chr4 (129268479-129268591) | |
| 319-431, gnl|loxAfr1|scaffold_92871 (4025-4224) | |
| 319-431, gnl|mm7|chr3 (40684796-40685030) | |
| 319-431, gnl|Mm7|chr3 (40684889-40684999) | |
| 319-431, gnl|oryCun1|scaffold_175550 (4748-4523) | |
| 319-431, gnl|panTro1|chr3 (146121425-146121662) | |
| 319-431, gnl|rheMac2|chr5 (120310749-120310990) | |
| 319-431, gnl|rn3|chr2 (127793823-127794057) | |
| 586-720, gnl|bosTau2|chr17 (18674545-18674681) | |
| 586-720, gnl|Hg17|chr4 (129288309-129288438) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-235, gnl|bosTau2|chr17 (18668378-18668485) | |
| 129-235, gnl|canFam2|chr19 (15974570-15974435) | |
| 129-235, gnl|danRer3|chrUn (11318647-11318770) | |
| 129-235, gnl|dasNov1|scaffold_51561 (156-291) | |
| 129-235, gnl|fr1|chrUn (108548348-108548479) | |
| 129-235, gnl|hg17|chr4 (129261676-129261811) | |
| 129-235, gnl|Hg17|chr4 (129261700-129261807) | |
| 129-235, gnl|loxAfr1|scaffold_92871 (948-1083) | |
| 129-235, gnl|mm7|chr3 (40679252-40679385) | |
| 129-235, gnl|Mm7|chr3 (40679275-40679381) | |
| 129-235, gnl|oryCun1|scaffold_206658 (29695-29564) | |
| 129-235, gnl|panTro1|chr3 (146114703-146114838) | |
| 129-235, gnl|rheMac2|chr5 (120302296-120302430) | |
| 129-235, gnl|rn3|chr2 (127782728-127782861) | |
| 129-235, gnl|tetNig1|chrUn_random (120877014-120877140) | |
| 319-431, gnl|bosTau2|chr17 (18671900-18672012) | |
| 319-431, gnl|canFam2|chr19 (15969215-15968974) | |
| 319-431, gnl|dasNov1|scaffold_51561 (5100-5333) | |
| 319-431, gnl|echTel1|scaffold_271120 (8322-8541) | |
| 319-431, gnl|hg17|chr4 (129268386-129268624) | |
| 319-431, gnl|Hg17|chr4 (129268479-129268591) | |
| 319-431, gnl|loxAfr1|scaffold_92871 (4025-4224) | |
| 319-431, gnl|mm7|chr3 (40684796-40685030) | |
| 319-431, gnl|Mm7|chr3 (40684889-40684999) | |
| 319-431, gnl|oryCun1|scaffold_175550 (4748-4523) | |
| 319-431, gnl|panTro1|chr3 (146121425-146121662) | |
| 319-431, gnl|rheMac2|chr5 (120310749-120310990) | |
| 319-431, gnl|rn3|chr2 (127793823-127794057) | |
| 586-720, gnl|bosTau2|chr17 (18674545-18674681) | |
| 586-720, gnl|Hg17|chr4 (129288309-129288438) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nco (0.161734) | |
| isp (0.150376) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| isp (0.150376) | |
| eru (0.120048) | |
| cbl (0.114797) | |
| ldo (0.0970026) |