Ss1.1-Pig3-SRG8004D10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACACTGTGGTCTCTATCCTGAACACCATCAATGAAGTTATTGCCGAGAACTTGGAGGCT GCCAAAAAGCTTCGAGAGACACAGGGGATTGAGAAGTTGGTTTTGATCAACAAATCAGGG AACCGCTCAGAAAAGGAAGTTCGGGCAGCAGCACTTGTATTACAGACAATCTGGGGATAT AAGGAATTGCGGAAGCCACTGGAAAAAGAAGGATGGAAGAAATCAGACTTTCAGGTGAAT CTAAACAATGCTTCACGAAGCCAGAGCAGTCATTCATATGACGATAGCACTCTTCCTCTC ATTGATCGGAACCAGAAATCAGATAAGAAACCTGATCGGGAAGAAATTCAGATGAGCAGT ATGGGATCAAACACAAAATCATTAGATAACAACTATTCCACATTGAATGAGAGAGGGGAC CACAATAGAACACTGGATCGATCTGGGGATCTAGGTGAAATGGAGCCATTGAAGGGAACA CCCCTGATGCAGAAGATTTAGCACCACTCTCTCCGCTACATCTGGGCTTATAATATATGT ACTTTTATTTTTTGGTGGTGAAACGGACTGATGATTTTTCCCTTTCTTCGCTGGACTATT GTGCCAACTGCCAGGCTGCCTCCTGCCCTTATAGCCCTCAGTGGCTGCCTTCTTTCCATC AACTCCCTAACTTCTTCCAGTGAAAGCTTAATTGTCCTTGCTCCCACCTCCAGATCCCCT CCAGTTACTCCCAAGAAGCCTGACTCAGTTATATGCCTATCTTGAGAAACTGCTGCAGAT TAGCTCTTTTTGCCAGCTCTCCCCGGAACTCTTGGCCTTGTGTGGAGGGAGGGAGAGAGT GGGAATCTTCACTGGAAGCCGTGGGAAGAATTGGAAATTACATGCTATATATGCAGTATC CAGCAATCTGATAAACTGATGACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACACTGTGGTCTCTATCCTGAACACCATCAATGAAGTTATTGCCGAGAACTTGGAGGCT GCCAAAAAGCTTCGAGAGACACAGGGGATTGAGAAGTTGGTTTTGATCAACAAATCAGGG AACCGCTCAGAAAAGGAAGTTCGGGCAGCAGCACTTGTATTACAGACAATCTGGGGATAT AAGGAATTGCGGAAGCCACTGGAAAAAGAAGGATGGAAGAAATCAGACTTTCAGGTGAAT CTAAACAATGCTTCACGAAGCCAGAGCAGTCATTCATATGACGATAGCACTCTTCCTCTC ATTGATCGGAACCAGAAATCAGATAAGAAACCTGATCGGGAAGAAATTCAGATGAGCAGT ATGGGATCAAACACAAAATCATTAGATAACAACTATTCCACATTGAATGAGAGAGGGGAC CACAATAGAACACTGGATCGATCTGGGGATCTAGGTGAAATGGAGCCATTGAAGGGAACA CCCCTGATGCAGAAGATTTAGCACCACTCTCTCCGCTACATCTGGGCTTATAATATATGT ACTTTTATTTTTTGGTGGTGAAACGGACTGATGATTTTTCCCTTTCTTCGCTGGACTATT GTGCCAACTGCCAGGCTGCCTCCTGCCCTTATAGCCCTCAGTGGCTGCCTTCTTTCCATC AACTCCCTAACTTCTTCCAGTGAAAGCTTAATTGTCCTTGCTCCCACCTCCAGATCCCCT CCAGTTACTCCCAAGAAGCCTGACTCAGTTATATGCCTATCTTGAGAAACTGCTGCAGAT TAGCTCTTTTTGCCAGCTCTCCCCGGAACTCTTGGCCTTGTGTGGAGGGAGGGAGAGAGT GGGAATCTTCACTGGAAGCCGTGGGAAGAATTGGAAATTACATGCTATATATGCAGTATC CAGCAATCTGATAAACTGATGACT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 520-638, - strand, RNAz p=0.816701 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 520-638, - strand, RNAz p=0.816701 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 1-120, gnl|bosTau2|chr15 (50923188-50923307) | |
| 1-120, gnl|canFam2|chr18 (41490034-41489773) | |
| 1-120, gnl|danRer3|chrNA (94133862-94134099) | |
| 1-120, gnl|echTel1|scaffold_232602 (5587-5331) | |
| 1-120, gnl|fr1|chrUn (240532046-240531829) | |
| 1-120, gnl|galGal2|chr5 (14235137-14234897) | |
| 1-120, gnl|hg17|chr11 (57333281-57333531) | |
| 1-120, gnl|Hg17|chr11 (57333396-57333515) | |
| 1-120, gnl|loxAfr1|scaffold_7507 (22339-22081) | |
| 1-120, gnl|mm7|chr2 (84453464-84453233) | |
| 1-120, gnl|Mm7|chr2 (84453364-84453245) | |
| 1-120, gnl|monDom2|scaffold_33 (20921825-20922059) | |
| 1-120, gnl|panTro1|chr9 (58242933-58243183) | |
| 1-120, gnl|rheMac2|chr14 (15598014-15597764) | |
| 1-120, gnl|rn3|chr3 (67714650-67714419) | |
| 1-120, gnl|tetNig1|chr1 (6918581-6918369) | |
| 1-120, gnl|xenTro1|scaffold_118 (1071402-1071172) | |
| 481-922, gnl|bosTau2|chr15 (50928354-50928792) | |
| 481-922, gnl|canFam2|chr18 (41484127-41483668) | |
| 481-922, gnl|canFam2|chr18 (41484540-41483800) | |
| 481-922, gnl|dasNov1|scaffold_39126 (3231-3712) | |
| 481-922, gnl|dasNov1|scaffold_39126 (2810-3580) | |
| 481-922, gnl|echTel1|scaffold_232602 (943-191) | |
| 481-922, gnl|echTel1|scaffold_319074 (8607-9227) | |
| 481-922, gnl|galGal2|chr5 (14233390-14232714) | |
| 481-922, gnl|hg17|chr11 (57339927-57340675) | |
| 481-922, gnl|Hg17|chr11 (57340336-57340779) | |
| 481-922, gnl|hg17|chr19 (32937957-32938426) | |
| 481-922, gnl|loxAfr1|scaffold_7507 (16985-16516) | |
| 481-922, gnl|loxAfr1|scaffold_7507 (17406-16643) | |
| 481-922, gnl|mm7|chr2 (84446621-84446166) | |
| 481-922, gnl|mm7|chr2 (84447030-84446293) | |
| 481-922, gnl|Mm7|chr2 (84446628-84446194) | |
| 481-922, gnl|monDom2|scaffold_33 (20926786-20927275) | |
| 481-922, gnl|monDom2|scaffold_33 (20926396-20927132) | |
| 481-922, gnl|oryCun1|scaffold_57228 (1955-1490) | |
| 481-922, gnl|oryCun1|scaffold_57228 (2362-1622) | |
| 481-922, gnl|panTro1|chr20 (29101827-29102296) | |
| 481-922, gnl|panTro1|chr9 (58250000-58250747) | |
| 481-922, gnl|rheMac2|chr14 (15590492-15590031) | |
| 481-922, gnl|rheMac2|chr14 (15590914-15590163) | |
| 481-922, gnl|rn3|chr3 (67707548-67707091) | |
| 481-922, gnl|rn3|chr3 (67707958-67707222) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-120, gnl|bosTau2|chr15 (50923188-50923307) | |
| 1-120, gnl|canFam2|chr18 (41490034-41489773) | |
| 1-120, gnl|danRer3|chrNA (94133862-94134099) | |
| 1-120, gnl|echTel1|scaffold_232602 (5587-5331) | |
| 1-120, gnl|fr1|chrUn (240532046-240531829) | |
| 1-120, gnl|galGal2|chr5 (14235137-14234897) | |
| 1-120, gnl|hg17|chr11 (57333281-57333531) | |
| 1-120, gnl|Hg17|chr11 (57333396-57333515) | |
| 1-120, gnl|loxAfr1|scaffold_7507 (22339-22081) | |
| 1-120, gnl|mm7|chr2 (84453464-84453233) | |
| 1-120, gnl|Mm7|chr2 (84453364-84453245) | |
| 1-120, gnl|monDom2|scaffold_33 (20921825-20922059) | |
| 1-120, gnl|panTro1|chr9 (58242933-58243183) | |
| 1-120, gnl|rheMac2|chr14 (15598014-15597764) | |
| 1-120, gnl|rn3|chr3 (67714650-67714419) | |
| 1-120, gnl|tetNig1|chr1 (6918581-6918369) | |
| 1-120, gnl|xenTro1|scaffold_118 (1071402-1071172) | |
| 481-922, gnl|bosTau2|chr15 (50928354-50928792) | |
| 481-922, gnl|canFam2|chr18 (41484127-41483668) | |
| 481-922, gnl|canFam2|chr18 (41484540-41483800) | |
| 481-922, gnl|dasNov1|scaffold_39126 (3231-3712) | |
| 481-922, gnl|dasNov1|scaffold_39126 (2810-3580) | |
| 481-922, gnl|echTel1|scaffold_232602 (943-191) | |
| 481-922, gnl|echTel1|scaffold_319074 (8607-9227) | |
| 481-922, gnl|galGal2|chr5 (14233390-14232714) | |
| 481-922, gnl|hg17|chr11 (57339927-57340675) | |
| 481-922, gnl|Hg17|chr11 (57340336-57340779) | |
| 481-922, gnl|hg17|chr19 (32937957-32938426) | |
| 481-922, gnl|loxAfr1|scaffold_7507 (16985-16516) | |
| 481-922, gnl|loxAfr1|scaffold_7507 (17406-16643) | |
| 481-922, gnl|mm7|chr2 (84446621-84446166) | |
| 481-922, gnl|mm7|chr2 (84447030-84446293) | |
| 481-922, gnl|Mm7|chr2 (84446628-84446194) | |
| 481-922, gnl|monDom2|scaffold_33 (20926786-20927275) | |
| 481-922, gnl|monDom2|scaffold_33 (20926396-20927132) | |
| 481-922, gnl|oryCun1|scaffold_57228 (1955-1490) | |
| 481-922, gnl|oryCun1|scaffold_57228 (2362-1622) | |
| 481-922, gnl|panTro1|chr20 (29101827-29102296) | |
| 481-922, gnl|panTro1|chr9 (58250000-58250747) | |
| 481-922, gnl|rheMac2|chr14 (15590492-15590031) | |
| 481-922, gnl|rheMac2|chr14 (15590914-15590163) | |
| 481-922, gnl|rn3|chr3 (67707548-67707091) | |
| 481-922, gnl|rn3|chr3 (67707958-67707222) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| gul (0.177588) | |
| ill (0.175593) | |
| hyp (0.142837) | |
| eep (0.122564) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) | |
| ill (0.175593) | |
| hyp (0.142837) | |
| eep (0.122564) |