Non-Coding RNA Search

Ss1.1-Pig3-SRG8004D11.3

Sequence:


               
               CGGGAACTCTCCTCGAGATTGGTTGGGGACTGCATCCACCCAAGTGTCACCGTTTTCTTC
TCGTCAAGAAAATAAGCAGCCTTTTCGGCCAGAAATTCCACAGCCTGACCGAGAAGATAG
GAAGCTGGTTGCTCCCGTGAGGCCATGACAGAGGGAGGGAAAGAGGACGTTTGAAAACAA
AATCCCAACTCGGGACCTATTTAGTGCGGCGGGGGCGGAGCGACAATTCTCGCGCTCAGG
CCCAACTGCAGCTGCGCAGAGTCACATTTCCGTCCCCGCCCCCGCGAGCCTGCAGAACGA
GCTGTCATGGCGGCCGGGGTGTTAGGTTTGTGCGCTCGCCGCCTTTTAGCAGCAGCGGCG
ACGCGAGGGCTCCCGGCTGCCCGTGTTCGCTGGGAGTCCGGCTCCTCCAGGGCTGTGATC
GCCCCGTCCGCTCTGGTGGGAAAGCGGCCGCCGGAACCGACTATACGCTTGCAGGAGGAC
CCAGATCCGGAGGACGAAAACCTCTATGAGAAGAACCCAGATTCCCACGGTTATGACAAG
GACCCCATTGTGGACCTCTGGAACATGCGGGTCGTCTTCTTCTTTGGCTTCTCCATCGTC
TTGGTCCTTGGCAGCACCTTTGTGGCTTATCTGCCTGACTACAGGATGCAGGAGTGGGCC
CGCCGGGAAGCTGAGAGGCTCGTGAAATACCGAGAGGCCAACGGCCTCCCCCTCATGGAA
TCCAACTGCTTCGACCCCAACAAGATCCAGCTGCCGGAGGATGAGGACTGACCTGGGGCC
GAGAGAGGCTTAAGAAGCACCTCTTTCTTTATCTCCTGTCTGCCATTCTGCCCTTCTCTC
AGAGCACCTAATTAAAGGGACTGAAAATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TGCCCTTCTCTCAGAGCACCTAATTAAAGGGACTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAACTCTCCTCGAGATTGGTTGGGGACTGCATCCACCCAAGTGTCACCGTTTTCTTC
TCGTCAAGAAAATAAGCAGCCTTTTCGGCCAGAAATTCCACAGCCTGACCGAGAAGATAG
GAAGCTGGTTGCTCCCGTGAGGCCATGACAGAGGGAGGGAAAGAGGACGTTTGAAAACAA
AATCCCAACTCGGGACCTATTTAGTGCGGCGGGGGCGGAGCGACAATTCTCGCGCTCAGG
CCCAACTGCAGCTGCGCAGAGTCACATTTCCGTCCCCGCCCCCGCGAGCCTGCAGAACGA
GCTGTCATGGCGGCCGGGGTGTTAGGTTTGTGCGCTCGCCGCCTTTTAGCAGCAGCGGCG
ACGCGAGGGCTCCCGGCTGCCCGTGTTCGCTGGGAGTCCGGCTCCTCCAGGGCTGTGATC
GCCCCGTCCGCTCTGGTGGGAAAGCGGCCGCCGGAACCGACTATACGCTTGCAGGAGGAC
CCAGATCCGGAGGACGAAAACCTCTATGAGAAGAACCCAGATTCCCACGGTTATGACAAG
GACCCCATTGTGGACCTCTGGAACATGCGGGTCGTCTTCTTCTTTGGCTTCTCCATCGTC
TTGGTCCTTGGCAGCACCTTTGTGGCTTATCTGCCTGACTACAGGATGCAGGAGTGGGCC
CGCCGGGAAGCTGAGAGGCTCGTGAAATACCGAGAGGCCAACGGCCTCCCCCTCATGGAA
TCCAACTGCTTCGACCCCAACAAGATCCAGCTGCCGGAGGATGAGGACTGACCTGGGGCC
GAGAGAGGCTTAAGAAGCACCTCTTTCTTTATCTCCTGTCTGCCATTCTGCCCTTCTCTC
AGAGCACCTAATTAAAGGGACTGAAAATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
TGCCCTTCTCTCAGAGCACCTAATTAAAGGGACTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|32363332|sp|Q8HXG5|NESM_BOVIN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|32363332|sp|Q8HXG5|NESM_BOVIN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               621-839, gnl|bosTau2|chr25 (2680878-2680663)
               

               
               621-839, gnl|Hg17|chr11 (91708996-91708783)
               

               
               621-839, gnl|Mm7|chr5 (122297084-122297283)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               621-839, gnl|bosTau2|chr25 (2680878-2680663)
               

               
               621-839, gnl|Hg17|chr11 (91708996-91708783)
               

               
               621-839, gnl|Mm7|chr5 (122297084-122297283)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

Help | Less info


               
               cov (0.792917)
               

               
               fbs (0.701385)
               

               
               ece (0.687916)
               

               
               nms (0.641574)
               

               
               cli (0.611247)
               

               
               hlv (0.557025)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               hyp (0.285673)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               ctl (0.153069)
               

               
               cag (0.151194)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.792917)
               

               
               fbs (0.701385)
               

               
               ece (0.687916)
               

               
               nms (0.641574)
               

               
               cli (0.611247)
               

               
               hlv (0.557025)
               

               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               ssp (0.406559)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               vin (0.332557)
               

               
               nco (0.323468)
               

               
               hyp (0.285673)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               ctl (0.153069)
               

               
               cag (0.151194)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	621-839, gnl\|bosTau2\|chr25 (2680878-2680663)
	621-839, gnl\|Hg17\|chr11 (91708996-91708783)
	621-839, gnl\|Mm7\|chr5 (122297084-122297283)

	cov (0.792917)
	fbs (0.701385)
	ece (0.687916)
	nms (0.641574)
	cli (0.611247)
	hlv (0.557025)
	mas (0.42061)
	hea (0.408998)
	ssp (0.406559)
	nlu (0.383362)
	nep (0.36785)
	vin (0.332557)
	nco (0.323468)
	hyp (0.285673)
	nca (0.273748)
	pla (0.267344)
	nmm (0.265604)
	fli (0.202881)
	jej (0.197844)
	fcc (0.197785)
	ton (0.1755)
	fhi (0.169578)
	nje (0.16592)
	ctl (0.153069)
	cag (0.151194)
	sug (0.127291)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	eje (0.0988338)