Ss1.1-Pig3-SRG8004D19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAAGAAAATGTTATCAATCACACGGACGAAGAAGGATTTACTCCTCTGATGTGGGCTGC AGCACACGGGCAAATAGCTGTGGTAGAGTTTCTACTTCAGAATGGTGCGGATCCCCAGCT TTTGGGAAAAGGTCGAGAAAGTGCACTGTCATTGGCCTGTAGTAAGGGCTACACAGATAT TGTCAAGATGCTGCTGGATTGTGGAGTGGATGTAAATGAATACGATTGGAATGGAGGGAC GCCTTTGCTTTATGCTGTACATGGAAATCATGTGAAATGTGTAAAAATGCTCTTAGAAAA TGGAGCTGACCCAACAATTGAAACTGACTCTGGATATAATTCTATGGACTTAGCTGTAGC CTTGGGCTACAGAAGTGTTCAACAGGTTATTGAGTCACATTTACTGAAACTGCTTCAGAA CATCAAGGAGTAGACAGAGTCGTCAGAAAGTGTTGTGTGCCCTTCCATTTACTTCTGGTT CTTATAAATGATAGTTTTGTTTACTTATAAATTTTTACCTCAGTTGCAATATTTACTGAT TTTTAGTAAGTTTTAATAAATATTCCTCTGAGTAAATGTTCACTGGTTTATAATAAAATG TTGATGCTTTTTTATAAATGTTTTACTGCATATTTAAAATTATAAATGAATGTTTTGTGG CATGTAAATTTTTATGGTACAGATAGTTATCTGTCTTTGTATCAAGTGCTGTAATTTAAC ATTTTCAGAAATTATTCTACCCTGTTCATCTTCATTCTTTTATTAACTTGACTTTATATA TGGTTTGCTATAAATCCATAGGAAAAAAATTGTTATTATTGAATTTAAAATGCACAGTGT GATTGTTTACAAAATGATATAAATGAATAAAGTGCTTTTTTTCTGTTAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAAGAAAATGTTATCAATCACACGGACGAAGAAGGATTTACTCCTCTGATGTGGGCTGC AGCACACGGGCAAATAGCTGTGGTAGAGTTTCTACTTCAGAATGGTGCGGATCCCCAGCT TTTGGGAAAAGGTCGAGAAAGTGCACTGTCATTGGCCTGTAGTAAGGGCTACACAGATAT TGTCAAGATGCTGCTGGATTGTGGAGTGGATGTAAATGAATACGATTGGAATGGAGGGAC GCCTTTGCTTTATGCTGTACATGGAAATCATGTGAAATGTGTAAAAATGCTCTTAGAAAA TGGAGCTGACCCAACAATTGAAACTGACTCTGGATATAATTCTATGGACTTAGCTGTAGC CTTGGGCTACAGAAGTGTTCAACAGGTTATTGAGTCACATTTACTGAAACTGCTTCAGAA CATCAAGGAGTAGACAGAGTCGTCAGAAAGTGTTGTGTGCCCTTCCATTTACTTCTGGTT CTTATAAATGATAGTTTTGTTTACTTATAAATTTTTACCTCAGTTGCAATATTTACTGAT TTTTAGTAAGTTTTAATAAATATTCCTCTGAGTAAATGTTCACTGGTTTATAATAAAATG TTGATGCTTTTTTATAAATGTTTTACTGCATATTTAAAATTATAAATGAATGTTTTGTGG CATGTAAATTTTTATGGTACAGATAGTTATCTGTCTTTGTATCAAGTGCTGTAATTTAAC ATTTTCAGAAATTATTCTACCCTGTTCATCTTCATTCTTTTATTAACTTGACTTTATATA TGGTTTGCTATAAATCCATAGGAAAAAAATTGTTATTATTGAATTTAAAATGCACAGTGT GATTGTTTACAAAATGATATAAATGAATAAAGTGCTTTTTTTCTGTTAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 104-229, gnl|bosTau2|chr20 (3617938-3617813) | |
| 104-229, gnl|canFam2|chr2 (59236337-59236474) | |
| 104-229, gnl|danRer3|chr5 (34019616-34019750) | |
| 104-229, gnl|dasNov1|scaffold_58966 (7271-7408) | |
| 104-229, gnl|echTel1|scaffold_112970 (682-815) | |
| 104-229, gnl|fr1|chrUn (74173237-74173371) | |
| 104-229, gnl|galGal2|chrUn (132998127-132997990) | |
| 104-229, gnl|hg17|chr5 (72886434-72886571) | |
| 104-229, gnl|Hg17|chr5 (72886567-72886442) | |
| 104-229, gnl|loxAfr1|scaffold_197915 (87-224) | |
| 104-229, gnl|mm7|chr13 (95341651-95341514) | |
| 104-229, gnl|Mm7|chr13 (95341516-95341641) | |
| 104-229, gnl|monDom2|scaffold_60 (7049974-7050109) | |
| 104-229, gnl|oryCun1|scaffold_172486 (5853-5990) | |
| 104-229, gnl|panTro1|chr4 (42580146-42580009) | |
| 104-229, gnl|rheMac2|chr6 (69747821-69747958) | |
| 104-229, gnl|rn3|chr2 (28782808-28782671) | |
| 104-229, gnl|tetNig1|chrUn_random (2906886-2906756) | |
| 104-229, gnl|xenTro1|scaffold_120 (1143772-1143908) | |
| 377-887, gnl|bosTau2|chr20 (3616323-3615801) | |
| 377-887, gnl|Hg17|chr5 (72884434-72883913) | |
| 377-887, gnl|Mm7|chr13 (95343239-95343771) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 104-229, gnl|bosTau2|chr20 (3617938-3617813) | |
| 104-229, gnl|canFam2|chr2 (59236337-59236474) | |
| 104-229, gnl|danRer3|chr5 (34019616-34019750) | |
| 104-229, gnl|dasNov1|scaffold_58966 (7271-7408) | |
| 104-229, gnl|echTel1|scaffold_112970 (682-815) | |
| 104-229, gnl|fr1|chrUn (74173237-74173371) | |
| 104-229, gnl|galGal2|chrUn (132998127-132997990) | |
| 104-229, gnl|hg17|chr5 (72886434-72886571) | |
| 104-229, gnl|Hg17|chr5 (72886567-72886442) | |
| 104-229, gnl|loxAfr1|scaffold_197915 (87-224) | |
| 104-229, gnl|mm7|chr13 (95341651-95341514) | |
| 104-229, gnl|Mm7|chr13 (95341516-95341641) | |
| 104-229, gnl|monDom2|scaffold_60 (7049974-7050109) | |
| 104-229, gnl|oryCun1|scaffold_172486 (5853-5990) | |
| 104-229, gnl|panTro1|chr4 (42580146-42580009) | |
| 104-229, gnl|rheMac2|chr6 (69747821-69747958) | |
| 104-229, gnl|rn3|chr2 (28782808-28782671) | |
| 104-229, gnl|tetNig1|chrUn_random (2906886-2906756) | |
| 104-229, gnl|xenTro1|scaffold_120 (1143772-1143908) | |
| 377-887, gnl|bosTau2|chr20 (3616323-3615801) | |
| 377-887, gnl|Hg17|chr5 (72884434-72883913) | |
| 377-887, gnl|Mm7|chr13 (95343239-95343771) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| gul (0.355177) | |
| lin (0.291206) | |
| ssp (0.271039) | |
| pgl (0.236967) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| fco (0.157208) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.355177) | |
| lin (0.291206) | |
| ssp (0.271039) | |
| pgl (0.236967) | |
| cmu (0.186393) | |
| rec (0.17307) | |
| fco (0.157208) | |
| isp (0.150376) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lyg (0.133103) | |
| eep (0.122564) | |
| jca (0.11396) |