Non-Coding RNA Search

Ss1.1-Pig3-SRG8004D20.3

Sequence:


               
               CTTGTCCTAACCTAACGAGGCAGGAAAAGAACTGTCAGAGCTGGAGAATGGACCAAAGGT
AACCTCAGAGAGACAGCTGCGGGACGACTCAGCCAAGTGTAAGGAGACTTCAGCTGTGGG
TGTGGAAGTTCTGTGCACAAGTTCTCCTTTGAGTTTTCCGTCTTTCTTTTTAAACCCCAA
TTCTCTGGGTCAGCTCTCTGTGGGCACCCTGGAACATTGCTGAAGAGGGGAGAGAAAATC
GAGGGACATTCATAGTGTCTTCAGCACTCACAGACCTTCCGCAGACCCCCAGCAAGGGTG
AACATGGATCTACTAACACTCAGGCGGAGAAGGGAGAGACGGGAGGGAACTTAAGCTTAG
TGAGAGCAAAATTACTCCATTCAGCCTTCTAAGGCCAGTGGGAGTTTTGAGAGAGGTTTC
TGCTCAAGCTGGGATCTGGAGGGAGAGCTTTGATGTTGCCAGATCCTTGCACCCGTTGGT
CTAAATTGCATCAGAGCACCATGTGAGCGCGCTCATTCCACGTGCCGCTACCACTCTCGC
CATTCTGCTGTCCACTGTCTCTTGAGAGAGCCTCTTTGCATGTTTTCCAGAATCTGTGTT
CATTTGTCCTTTCTTCTCCTTTGTTCTTTTTGCTCAATGATGTGACCAGTCACTGCCCCT
CTGGGGCTTTCATTTGCCAAGAAAGAAACATCCTGAAACCAGCACTGTTTAGCTTGATAC
CTTTCTAATGTCCATGTCAATTTTCAATAAAATTCAAAGAAATGCTCAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTCCTAACCTAACGAGGCAGGAAAAGAACTGTCAGAGCTGGAGAATGGACCAAAGGT
AACCTCAGAGAGACAGCTGCGGGACGACTCAGCCAAGTGTAAGGAGACTTCAGCTGTGGG
TGTGGAAGTTCTGTGCACAAGTTCTCCTTTGAGTTTTCCGTCTTTCTTTTTAAACCCCAA
TTCTCTGGGTCAGCTCTCTGTGGGCACCCTGGAACATTGCTGAAGAGGGGAGAGAAAATC
GAGGGACATTCATAGTGTCTTCAGCACTCACAGACCTTCCGCAGACCCCCAGCAAGGGTG
AACATGGATCTACTAACACTCAGGCGGAGAAGGGAGAGACGGGAGGGAACTTAAGCTTAG
TGAGAGCAAAATTACTCCATTCAGCCTTCTAAGGCCAGTGGGAGTTTTGAGAGAGGTTTC
TGCTCAAGCTGGGATCTGGAGGGAGAGCTTTGATGTTGCCAGATCCTTGCACCCGTTGGT
CTAAATTGCATCAGAGCACCATGTGAGCGCGCTCATTCCACGTGCCGCTACCACTCTCGC
CATTCTGCTGTCCACTGTCTCTTGAGAGAGCCTCTTTGCATGTTTTCCAGAATCTGTGTT
CATTTGTCCTTTCTTCTCCTTTGTTCTTTTTGCTCAATGATGTGACCAGTCACTGCCCCT
CTGGGGCTTTCATTTGCCAAGAAAGAAACATCCTGAAACCAGCACTGTTTAGCTTGATAC
CTTTCTAATGTCCATGTCAATTTTCAATAAAATTCAAAGAAATGCTCAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr16 (36126836-36127657)
               

               
               1-780, gnl|Hg17|chrX (118532358-118531569)
               

               
               1-780, gnl|Mm7|chrX (31672795-31672007)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr16 (36126836-36127657)
               

               
               1-780, gnl|Hg17|chrX (118532358-118531569)
               

               
               1-780, gnl|Mm7|chrX (31672795-31672007)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.39557)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	1-780, gnl\|bosTau2\|chr16 (36126836-36127657)
	1-780, gnl\|Hg17\|chrX (118532358-118531569)
	1-780, gnl\|Mm7\|chrX (31672795-31672007)