Non-Coding RNA Search

Ss1.1-Pig3-SRG8004F09.3

Sequence:


               
               GGCCAGGGAAGCAGCGGTGTGGCTGGCGGCGGGCCGGTCTGGGGGCCCGGGTACGCGACT
AACCAGGGGAGCAGAGGCTTTGGGTACCAGCCCCCCAACTACTCGACAGCCTACCTGCCT
GGCGGTTACGGCTCTTCCCACTGTAAACCGGAGGCCCCTTCGCCGTGCTCCCTCCCTCAG
AGGAACCCCATGCTCCAGGGTGAGCTGCTTCCCCCCTACAGCCCTTACCCACCCCCAGGC
TCTCCCACTTTGTATAACCCTCCCCTCTCAGGGGCCCCTATGCCTCTAACCCACCTCTAA
CCCTCATGGACAGAAATGAACCTCCCAGAAAGGTTTCCACCCTCTTCACCCAGAACCACC
TCCCCCCATTCCCAGGTTGCAACCTCTTTGTAACTGGTGGGCCACAGTTCAGAGGAAATG
GGCAGTCCCCCCCAAGCCCCTGAAAGCCAGGGGGACCAACACTTCTATTTTTTTGTAAGC
TGAACACAGTTTTATACGATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAGGGAAGCAGCGGTGTGGCTGGCGGCGGGCCGGTCTGGGGGCCCGGGTACGCGACT
AACCAGGGGAGCAGAGGCTTTGGGTACCAGCCCCCCAACTACTCGACAGCCTACCTGCCT
GGCGGTTACGGCTCTTCCCACTGTAAACCGGAGGCCCCTTCGCCGTGCTCCCTCCCTCAG
AGGAACCCCATGCTCCAGGGTGAGCTGCTTCCCCCCTACAGCCCTTACCCACCCCCAGGC
TCTCCCACTTTGTATAACCCTCCCCTCTCAGGGGCCCCTATGCCTCTAACCCACCTCTAA
CCCTCATGGACAGAAATGAACCTCCCAGAAAGGTTTCCACCCTCTTCACCCAGAACCACC
TCCCCCCATTCCCAGGTTGCAACCTCTTTGTAACTGGTGGGCCACAGTTCAGAGGAAATG
GGCAGTCCCCCCCAAGCCCCTGAAAGCCAGGGGGACCAACACTTCTATTTTTTTGTAAGC
TGAACACAGTTTTATACGATTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4186021|emb|CAA06920.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4186021|emb|CAA06920.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               166-285, + strand, RNAz p=0.767272
               

               
               354-462, - strand, RNAz p=0.962323

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-285, + strand, RNAz p=0.767272
               

               
               354-462, - strand, RNAz p=0.962323

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_006942, +
               

               
               3' of AK027742, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006942, +
               

               
               3' of AK027742, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               126-504, gnl|bosTau2|chr19 (13288354-13287958)
               

               
               126-504, gnl|Hg17|chr17 (7432594-7432220)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-504, gnl|bosTau2|chr19 (13288354-13287958)
               

               
               126-504, gnl|Hg17|chr17 (7432594-7432220)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	166-285, + strand, RNAz p=0.767272
	354-462, - strand, RNAz p=0.962323

	126-504, gnl\|bosTau2\|chr19 (13288354-13287958)
	126-504, gnl\|Hg17\|chr17 (7432594-7432220)