Non-Coding RNA Search

Ss1.1-Pig3-SRG8004F15.5

Sequence:


               
               TCCCGGGTCGACCCACGCGTCCGGACCCTTGTCTGTAGAAGGACGGGGTGGGGGCGGGGG
CAGAGAAGGGAACGTGGTCTGGGGCTCAAGGTGGCCTTCCCACCAGGAGTGAGGGAGGGA
GACCTTGCCGAGTGGTTTTGACACAGCCTGTGCACACAGCCCTCTCGTCTGGGTTTCTCA
GAAATGCCCTCCCTGCCCAGCAATGACCTTCCCTCTTGACTCTCGAATTTTACCTGGAGC
CCAACCCTTTGGAGCAGTGGAGCACCCTACCCCTCTGTAGAGACTGCGTAAAGAATTAGC
TTCTGAAATGTAGCCACGCTAACCTTGCCAGAACTGTAACGAGAGCATTCCTGCATCAAA
AACAACCCTGCTGTTAGTTTTTCAAAGTTTATCGTGTTTGATTTTTTTACACTGAAAAAT
AAAAAAATACTGATGTGTTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCGGGTCGACCCACGCGTCCGGACCCTTGTCTGTAGAAGGACGGGGTGGGGGCGGGGG
CAGAGAAGGGAACGTGGTCTGGGGCTCAAGGTGGCCTTCCCACCAGGAGTGAGGGAGGGA
GACCTTGCCGAGTGGTTTTGACACAGCCTGTGCACACAGCCCTCTCGTCTGGGTTTCTCA
GAAATGCCCTCCCTGCCCAGCAATGACCTTCCCTCTTGACTCTCGAATTTTACCTGGAGC
CCAACCCTTTGGAGCAGTGGAGCACCCTACCCCTCTGTAGAGACTGCGTAAAGAATTAGC
TTCTGAAATGTAGCCACGCTAACCTTGCCAGAACTGTAACGAGAGCATTCCTGCATCAAA
AACAACCCTGCTGTTAGTTTTTCAAAGTTTATCGTGTTTGATTTTTTTACACTGAAAAAT
AAAAAAATACTGATGTGTTTAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               24-138, + strand, RNAz p=0.798965

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-138, + strand, RNAz p=0.798965

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-442, gnl|bosTau2|chr19 (32393806-32393397)
               

               
               24-442, gnl|Hg17|chr17 (35167896-35167493)
               

               
               24-442, gnl|Mm7|chr11 (98570308-98569930)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-442, gnl|bosTau2|chr19 (32393806-32393397)
               

               
               24-442, gnl|Hg17|chr17 (35167896-35167493)
               

               
               24-442, gnl|Mm7|chr11 (98570308-98569930)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	24-442, gnl\|bosTau2\|chr19 (32393806-32393397)
	24-442, gnl\|Hg17\|chr17 (35167896-35167493)
	24-442, gnl\|Mm7\|chr11 (98570308-98569930)