Non-Coding RNA Search

Ss1.1-Pig3-SRG8004H01.3

Sequence:


               
               AATTTTGGACTTTTCTTTTCTCGTACTACAGATTATACAGTGGCTACTTTTTATTTTGGC
CTGGATTCTCTCTGAGGCCGACTTTTCCCCTGCATCCTCCTGTCTTTCCGTTTCTGCCCC
TTTGGACACTTCCTGAGAGTCTCAACTCCAAACTGACACCTCCTCCCCACCCCCACCCCC
TCCCCCGCGTCCATCCATCCCTAAGCATTTCAGAGCGTGTGGGGTCCGAGCTGGCCCGGA
GGCCCACCCCCCACCCACCCTCTCCCCCCAAGCGAGACGGGGGAGACAGACCCAAAGCAA
TCCCAGCAGGACTTGTTGCCAGCGATACCAAAACAGTCTTTTCCCAAGCAGTGCCTCACA
TGTCTGCTGGTGTGGCTTTGGGGTTCTCCTCCCCCACTCCCTGGGGGTCCCCCAGGCCTC
AGGAAAGAGGAGGCGGGATCCAGCAGGACTAAGGGCTCCAGGAGAGGAAGAAAGTCACAC
ACGCCCAAGCCACCACTCTCCCTGCAGCCCTTGCTTCACACCACCTGGCTAGAAGGGGAC
CCACTGGAAAGGGGTCGGGGCCACCTCAGCCCCCCTCCAGTTGTGAACCCCCAAAGCCCA
TTCCCCAAATGCATCAACACCCCATCCTCCCACCTCAGGTCCCAGCCAGGCCCCCCTGAA
ACCAAAGCCCCTTCAAATCCAGGGGTCCTGGCCTCTTCCCCCTCCCAGAACCGCACGTGG
GGACAGAAAGGCAGAGTGCCTGAGGATAGAACGCAGGTCGTGGGGGGCAGTGGTGGGTTG
GTGGGGAGAGAGGGAGAGACCCATTTTCCTCTCTGAACTTTCTTTCCTCTTTTTTCTTCA
TCTCTTTTCTTTCTAAGATTTTTTAGTGGTGTTGCTGTTCATTCTTTTCCCTCAGATATT
TTTTGAGTTTTTTTTCCCCATTTTGTATTTTACCAATATTACCAGGATAGTTTACTCTCT
GTTTCTCGCTTTCTGCTTGCTGCACACAATGGATAAACACACACACACACACAGACACAC
ACACACACACACACACCCATGCTCATGAACCCATGTCATGAGAAGGTTCGGGCCAGGCCC
ACTACCCACCTTGTGCCCCTCCTCCTCCCTAAGGTGGGGACAGGATGGGGGACCAGGGGA
CGTGGGGCAGAGCCAGGCCCAGCCTTCTCCTGGCCCGGCTCCCCCGCCCTGCTCCTTCAC
ATCATACTCCGATCATAACCTTGTATATTAAGCAGTCATTTCGGTTTTCCGCGGACGCGC
CTACCTAAGTACCATTTACAGAAAGTGACTCTGGCTGTTATTATTTTGTTTGTTTGTTTC
CCTATGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTGGACTTTTCTTTTCTCGTACTACAGATTATACAGTGGCTACTTTTTATTTTGGC
CTGGATTCTCTCTGAGGCCGACTTTTCCCCTGCATCCTCCTGTCTTTCCGTTTCTGCCCC
TTTGGACACTTCCTGAGAGTCTCAACTCCAAACTGACACCTCCTCCCCACCCCCACCCCC
TCCCCCGCGTCCATCCATCCCTAAGCATTTCAGAGCGTGTGGGGTCCGAGCTGGCCCGGA
GGCCCACCCCCCACCCACCCTCTCCCCCCAAGCGAGACGGGGGAGACAGACCCAAAGCAA
TCCCAGCAGGACTTGTTGCCAGCGATACCAAAACAGTCTTTTCCCAAGCAGTGCCTCACA
TGTCTGCTGGTGTGGCTTTGGGGTTCTCCTCCCCCACTCCCTGGGGGTCCCCCAGGCCTC
AGGAAAGAGGAGGCGGGATCCAGCAGGACTAAGGGCTCCAGGAGAGGAAGAAAGTCACAC
ACGCCCAAGCCACCACTCTCCCTGCAGCCCTTGCTTCACACCACCTGGCTAGAAGGGGAC
CCACTGGAAAGGGGTCGGGGCCACCTCAGCCCCCCTCCAGTTGTGAACCCCCAAAGCCCA
TTCCCCAAATGCATCAACACCCCATCCTCCCACCTCAGGTCCCAGCCAGGCCCCCCTGAA
ACCAAAGCCCCTTCAAATCCAGGGGTCCTGGCCTCTTCCCCCTCCCAGAACCGCACGTGG
GGACAGAAAGGCAGAGTGCCTGAGGATAGAACGCAGGTCGTGGGGGGCAGTGGTGGGTTG
GTGGGGAGAGAGGGAGAGACCCATTTTCCTCTCTGAACTTTCTTTCCTCTTTTTTCTTCA
TCTCTTTTCTTTCTAAGATTTTTTAGTGGTGTTGCTGTTCATTCTTTTCCCTCAGATATT
TTTTGAGTTTTTTTTCCCCATTTTGTATTTTACCAATATTACCAGGATAGTTTACTCTCT
GTTTCTCGCTTTCTGCTTGCTGCACACAATGGATAAACACACACACACACACAGACACAC
ACACACACACACACACCCATGCTCATGAACCCATGTCATGAGAAGGTTCGGGCCAGGCCC
ACTACCCACCTTGTGCCCCTCCTCCTCCCTAAGGTGGGGACAGGATGGGGGACCAGGGGA
CGTGGGGCAGAGCCAGGCCCAGCCTTCTCCTGGCCCGGCTCCCCCGCCCTGCTCCTTCAC
ATCATACTCCGATCATAACCTTGTATATTAAGCAGTCATTTCGGTTTTCCGCGGACGCGC
CTACCTAAGTACCATTTACAGAAAGTGACTCTGGCTGTTATTATTTTGTTTGTTTGTTTC
CCTATGCAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               271-643, - strand, RNAz p=0.99026
               

               
               753-869, + strand, RNAz p=0.992265
               

               
               1051-1202, - strand, RNAz p=0.994209

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-643, - strand, RNAz p=0.99026
               

               
               753-869, + strand, RNAz p=0.992265
               

               
               1051-1202, - strand, RNAz p=0.994209

Predicted microRNA(s): 5 entry(ies)

More info

Predicted microRNA(s): 5 entry(ies)

Help | Less info


               
               1087-1206, + strand, RNAmicro p=0.99999
               

               
               1091-1228, - strand, RNAmicro p=0.99999
               

               
               280-394, + strand, RNAmicro p=0.999885
               

               
               772-863, + strand, RNAmicro p=0.979257
               

               
               563-620, - strand, RNAmicro p=0.948529

Predicted microRNA(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1087-1206, + strand, RNAmicro p=0.99999
               

               
               1091-1228, - strand, RNAmicro p=0.99999
               

               
               280-394, + strand, RNAmicro p=0.999885
               

               
               772-863, + strand, RNAmicro p=0.979257
               

               
               563-620, - strand, RNAmicro p=0.948529

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               113-702, gnl|bosTau2|chr7 (16253017-16253571)
               

               
               113-702, gnl|Hg17|chr19 (3418950-3419481)
               


               
               720-1332, gnl|bosTau2|chr7 (16253627-16254243)
               

               
               720-1332, gnl|Hg17|chr19 (3419521-3420101)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-702, gnl|bosTau2|chr7 (16253017-16253571)
               

               
               113-702, gnl|Hg17|chr19 (3418950-3419481)
               


               
               720-1332, gnl|bosTau2|chr7 (16253627-16254243)
               

               
               720-1332, gnl|Hg17|chr19 (3419521-3420101)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               clu (0.119646)
               

               
               nbm (0.0993246)

	271-643, - strand, RNAz p=0.99026
	753-869, + strand, RNAz p=0.992265
	1051-1202, - strand, RNAz p=0.994209

	1087-1206, + strand, RNAmicro p=0.99999
	1091-1228, - strand, RNAmicro p=0.99999
	280-394, + strand, RNAmicro p=0.999885
	772-863, + strand, RNAmicro p=0.979257
	563-620, - strand, RNAmicro p=0.948529

	113-702, gnl\|bosTau2\|chr7 (16253017-16253571)
	113-702, gnl\|Hg17\|chr19 (3418950-3419481)

	720-1332, gnl\|bosTau2\|chr7 (16253627-16254243)
	720-1332, gnl\|Hg17\|chr19 (3419521-3420101)

	nms (0.213858)
	nep (0.183925)
	ton (0.1755)
	cli (0.152812)
	pty (0.142714)
	pla (0.133672)
	clu (0.119646)
	nbm (0.0993246)