Non-Coding RNA Search

Ss1.1-Pig3-SRG8004H16.3

Sequence:


               
               GTTTACGAAAGGCTGCTCTGGCCTTTGGTTTCCTGGACTTGCTCAAAGGGGTGGCTGACA
TGCTGGAAAGGGAGTGCACACTGCTGCCCGACACAGCCCATCCTGATGCTGCGTTCCAGC
TGACCCATGCCGCCCAGCAGCTCAAGCTAGCCAGTACTGGCACCTCTGAGTATGCCGGGT
ATGACCACAACATTACACCTTTGCAGACAGACTTCTCTGGGAGCAGCACTGAAAGAATGT
GAAGCTGACTTTGGGAGCCTTCCTTCTTTTTTTCAAGTGAAAATGATTTAAGGTAAAAAC
TTTTCTCGTCTGTTCACCTATTGAAGTAGCTACTCAGAGACCTTCCTGAGGCTGCTTCAG
AAGCACCACTTGTGGGTTGGACTCTGCTAGTCTGAGCGGGGCTCTGCAAAGGTGGGCAGT
TGCTTGGGCTTTGACTTCAGCTTTTTGGAGCTCAGAGTCTTTAAGCCCGAAAGACAACTG
TTGCTCCCACAGTGGCCACATCTCCTGAGATGCTTGAAGAACTGACCAGCACAAAACCGT
CCCCACCTTCCTCAGGAAACCTAAAACCTGGGTTCTCTGCTGCCAAAAGACCTCTTCACT
CCTCTCCTCTCCCAACCATGGGACATTTTCAAGCTTCTCTGCTTGGAATGAACAGCCCAG
ACTGTCTGGGACTTGCTAAACACAAGCCCAAAATCAGAGTTTCAGAATTTCCTTAGAACT
TGGACAAAAACTCAGTGGTAACCCTTAGTTGCTTTTGGTGTACTTGAGATACAAATTTTT
AAACAGCAATCTTAAATGTATAAAATGATTCTCGTATCTTCAAATTTTTAATGATAATAA
AATGTTTGATTTTCTATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTACGAAAGGCTGCTCTGGCCTTTGGTTTCCTGGACTTGCTCAAAGGGGTGGCTGACA
TGCTGGAAAGGGAGTGCACACTGCTGCCCGACACAGCCCATCCTGATGCTGCGTTCCAGC
TGACCCATGCCGCCCAGCAGCTCAAGCTAGCCAGTACTGGCACCTCTGAGTATGCCGGGT
ATGACCACAACATTACACCTTTGCAGACAGACTTCTCTGGGAGCAGCACTGAAAGAATGT
GAAGCTGACTTTGGGAGCCTTCCTTCTTTTTTTCAAGTGAAAATGATTTAAGGTAAAAAC
TTTTCTCGTCTGTTCACCTATTGAAGTAGCTACTCAGAGACCTTCCTGAGGCTGCTTCAG
AAGCACCACTTGTGGGTTGGACTCTGCTAGTCTGAGCGGGGCTCTGCAAAGGTGGGCAGT
TGCTTGGGCTTTGACTTCAGCTTTTTGGAGCTCAGAGTCTTTAAGCCCGAAAGACAACTG
TTGCTCCCACAGTGGCCACATCTCCTGAGATGCTTGAAGAACTGACCAGCACAAAACCGT
CCCCACCTTCCTCAGGAAACCTAAAACCTGGGTTCTCTGCTGCCAAAAGACCTCTTCACT
CCTCTCCTCTCCCAACCATGGGACATTTTCAAGCTTCTCTGCTTGGAATGAACAGCCCAG
ACTGTCTGGGACTTGCTAAACACAAGCCCAAAATCAGAGTTTCAGAATTTCCTTAGAACT
TGGACAAAAACTCAGTGGTAACCCTTAGTTGCTTTTGGTGTACTTGAGATACAAATTTTT
AAACAGCAATCTTAAATGTATAAAATGATTCTCGTATCTTCAAATTTTTAATGATAATAA
AATGTTTGATTTTCTATAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-429, + strand, RNAz p=0.98006

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-429, + strand, RNAz p=0.98006

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_030800, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_030800, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-861, gnl|bosTau2|chr10 (9065117-9064296)
               

               
               1-861, gnl|Hg17|chr15 (63659040-63658169)
               

               
               1-861, gnl|Mm7|chr9 (65015510-65016279)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-861, gnl|bosTau2|chr10 (9065117-9064296)
               

               
               1-861, gnl|Hg17|chr15 (63659040-63658169)
               

               
               1-861, gnl|Mm7|chr9 (65015510-65016279)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cty (0.20816)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               jca (0.11396)

	1-861, gnl\|bosTau2\|chr10 (9065117-9064296)
	1-861, gnl\|Hg17\|chr15 (63659040-63658169)
	1-861, gnl\|Mm7\|chr9 (65015510-65016279)

	cty (0.20816)
	fbs (0.175346)
	pty (0.142714)
	lnt (0.142308)
	cov (0.132153)
	jca (0.11396)