Non-Coding RNA Search

Ss1.1-Pig3-SRG8004H17.3

Sequence:


               
               ACAAAGAGTGGACCCAGAGATATCTGTGGAAAGCTGGTTTCACCTTTGTGATTCTGAGCA
TTATGGGATGTGCCCTTCATTTTGCAGTGGCCTTGGAATCTGCTCTCCTTGGCCCATATT
GCTTCTACTCATTTTTGGGGATTGCAGGGACCAATTACCTTGGTTATGCAGTTGCCTTTC
CTTTTCCGTATGCAAAATTCCCATCAGTTTGTGTAGACCCACCACACTATGAAGAGTACC
ATCTGACACTTCAAGCCTTAGACTTGTGCCTGAGCTCTGCCATGCTCTGTGTGTCCCTGA
CCATGTTCTTCAAGCTTTCTGCAAGACTTCTCTGGAATGGACACATAAATGGTCAAAAGA
ATGGACAATAAATTTGAAGCAATGTTTCCTCTTAAATTTGTCATATTTGTGACCATTATT
TTGAAACATTATTTTGTGATCTTTAAAATTTTTCCCTCTATGTTCTTATAAAATAAAAAT
TAAATTGTACATGTTAGCTCTTTTTTGATTAACATTGTTTTTTCTGATTTATATGCTATG
ACATAAAAATTGAAATTATGTCTGAAATATAATTGGCAGTGAATGAATGTTTTCTTTAAA
TTCCTCTTGTTCACTGTGTGATGTTTCATTAAACTGTAATTTCATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAAGAGTGGACCCAGAGATATCTGTGGAAAGCTGGTTTCACCTTTGTGATTCTGAGCA
TTATGGGATGTGCCCTTCATTTTGCAGTGGCCTTGGAATCTGCTCTCCTTGGCCCATATT
GCTTCTACTCATTTTTGGGGATTGCAGGGACCAATTACCTTGGTTATGCAGTTGCCTTTC
CTTTTCCGTATGCAAAATTCCCATCAGTTTGTGTAGACCCACCACACTATGAAGAGTACC
ATCTGACACTTCAAGCCTTAGACTTGTGCCTGAGCTCTGCCATGCTCTGTGTGTCCCTGA
CCATGTTCTTCAAGCTTTCTGCAAGACTTCTCTGGAATGGACACATAAATGGTCAAAAGA
ATGGACAATAAATTTGAAGCAATGTTTCCTCTTAAATTTGTCATATTTGTGACCATTATT
TTGAAACATTATTTTGTGATCTTTAAAATTTTTCCCTCTATGTTCTTATAAAATAAAAAT
TAAATTGTACATGTTAGCTCTTTTTTGATTAACATTGTTTTTTCTGATTTATATGCTATG
ACATAAAAATTGAAATTATGTCTGAAATATAATTGGCAGTGAATGAATGTTTTCTTTAAA
TTCCTCTTGTTCACTGTGTGATGTTTCATTAAACTGTAATTTCATATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51492692|ref|XP_371680.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51492692|ref|XP_371680.3|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               62-181, + strand, RNAz p=0.595584
               

               
               222-341, - strand, RNAz p=0.663841

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               62-181, + strand, RNAz p=0.595584
               

               
               222-341, - strand, RNAz p=0.663841

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               23-351, gnl|bosTau2|chr1 (64664037-64663709)
               

               
               23-351, gnl|canFam2|chr34 (39165760-39166091)
               

               
               23-351, gnl|echTel1|scaffold_318858 (45659-45987)
               

               
               23-351, gnl|hg17|chr3 (173053975-173054306)
               

               
               23-351, gnl|Hg17|chr3 (173054015-173054343)
               

               
               23-351, gnl|loxAfr1|scaffold_9984 (9337-9668)
               

               
               23-351, gnl|mm7|chr3 (27700870-27700540)
               

               
               23-351, gnl|Mm7|chr3 (27700829-27700501)
               

               
               23-351, gnl|monDom2|scaffold_52 (145398-145071)
               

               
               23-351, gnl|oryCun1|scaffold_196094 (123959-123628)
               

               
               23-351, gnl|panTro1|chr2 (176551018-176551349)
               

               
               23-351, gnl|rheMac2|chr2 (115192010-115191680)
               

               
               23-351, gnl|rn3|chr2 (115157253-115156933)
               

               
               23-351, gnl|xenTro1|scaffold_3 (1967055-1966726)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-351, gnl|bosTau2|chr1 (64664037-64663709)
               

               
               23-351, gnl|canFam2|chr34 (39165760-39166091)
               

               
               23-351, gnl|echTel1|scaffold_318858 (45659-45987)
               

               
               23-351, gnl|hg17|chr3 (173053975-173054306)
               

               
               23-351, gnl|Hg17|chr3 (173054015-173054343)
               

               
               23-351, gnl|loxAfr1|scaffold_9984 (9337-9668)
               

               
               23-351, gnl|mm7|chr3 (27700870-27700540)
               

               
               23-351, gnl|Mm7|chr3 (27700829-27700501)
               

               
               23-351, gnl|monDom2|scaffold_52 (145398-145071)
               

               
               23-351, gnl|oryCun1|scaffold_196094 (123959-123628)
               

               
               23-351, gnl|panTro1|chr2 (176551018-176551349)
               

               
               23-351, gnl|rheMac2|chr2 (115192010-115191680)
               

               
               23-351, gnl|rn3|chr2 (115157253-115156933)
               

               
               23-351, gnl|xenTro1|scaffold_3 (1967055-1966726)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cmu (0.372787)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	62-181, + strand, RNAz p=0.595584
	222-341, - strand, RNAz p=0.663841

	23-351, gnl\|bosTau2\|chr1 (64664037-64663709)
	23-351, gnl\|canFam2\|chr34 (39165760-39166091)
	23-351, gnl\|echTel1\|scaffold_318858 (45659-45987)
	23-351, gnl\|hg17\|chr3 (173053975-173054306)
	23-351, gnl\|Hg17\|chr3 (173054015-173054343)
	23-351, gnl\|loxAfr1\|scaffold_9984 (9337-9668)
	23-351, gnl\|mm7\|chr3 (27700870-27700540)
	23-351, gnl\|Mm7\|chr3 (27700829-27700501)
	23-351, gnl\|monDom2\|scaffold_52 (145398-145071)
	23-351, gnl\|oryCun1\|scaffold_196094 (123959-123628)
	23-351, gnl\|panTro1\|chr2 (176551018-176551349)
	23-351, gnl\|rheMac2\|chr2 (115192010-115191680)
	23-351, gnl\|rn3\|chr2 (115157253-115156933)
	23-351, gnl\|xenTro1\|scaffold_3 (1967055-1966726)