Non-Coding RNA Search

Ss1.1-Pig3-SRG8004H21.3

Sequence:


               
               TTTGTTTGTTTGTTTTTTGTTTTTCCTTTCGGTCATAGAAAAATCTCTGAAAGACTTTGC
TGACCAACCAGCAGGAGCCTAAGGAGTGTAGGGGAGCCTGGGGGCCACTGTGCACCTCTG
GCCTGCTCCCAGTGTGGAAACCCTGCAGCCTTAAGAGGGAAAAGGCGCGGCCTGCTCTCT
CTCCCCACCCCTACGTCCGCCTGTGTCCACTTGTGTCCGTCTCTCTGGGAGCCCACTCCT
GCCTCGTCACTCCTGTATCTTGGCCTTTCGAGTGCCTTGGAGGTTTCCCTGACCTCCCGT
GAGGATCAGAGACTGTCCCCCTTTTTTAACTTTGACAATTGACTTTGGTTTCCTTTTCTA
ATTTTTATTATTTTTTAAACAATCCAGGATGATCCCCAGCTCTGATTCCTTCAAGGCCCA
GCATGTCTGGGTCTCCATTCCACACTTTTCGGTTTGAGATGGCTCAGCCCTTTTTTCTTT
CTCCCACATCTGCTGCAGGCATGGCTGTCTCCTGCCCTCTCCGACCTGTATTCCAGTTCC
AGGTCCCTCATTCCTTTCCACAGTCCCCTCACCTTCTGATGCCTTAAATGCCAGGCCCAG
GCCCCCGGCCCTGCTGGCCAGAGCCTCTCGGATGCTGAGCTCTGGAAGCTTGACTCAGGA
CCAAATGGCTCTGACCTGGGGATTGGCCCTCTCTACCCTGGGTTCCTTATCGTGGGGACA
GTAGAAGGCCAAAACTGTGGTCTTGGCAAACCAGTCCCACCAGCCCTCTTGCCCAGGCCT
AGGTGCAGAGATGGGCTTTCTCTGCTGGCTTCAACCTGTCCTCTTTAGGGCATTGTGCAT
CTCACTGAGCCTCCGCTGTCTCCCCCATTTTGAAGATGAGCTCTGCCTCTTCATCCCCAA
GCCAGATCACCCGGAGCTGGCCTCCCTTTGGCCCAGTGCTGGAAAATTCAACAACATGCT
GATAAGCTCTGCCCCTGCTCACCAGCAGGGCCTCTTGGCCTGAGGTGACCCTGGCCAGAT
GGGCCACCAGCTTCCCTCCCCTGACTTAGGGGGTCCGCATCCACTCCACGGGGCGGGTAT
TCTCTTCCCAGTCTTCTCACACAGACCTTTGCTGAATTAAAGTTTGTAAGTAAATGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTTGTTTGTTTTTTGTTTTTCCTTTCGGTCATAGAAAAATCTCTGAAAGACTTTGC
TGACCAACCAGCAGGAGCCTAAGGAGTGTAGGGGAGCCTGGGGGCCACTGTGCACCTCTG
GCCTGCTCCCAGTGTGGAAACCCTGCAGCCTTAAGAGGGAAAAGGCGCGGCCTGCTCTCT
CTCCCCACCCCTACGTCCGCCTGTGTCCACTTGTGTCCGTCTCTCTGGGAGCCCACTCCT
GCCTCGTCACTCCTGTATCTTGGCCTTTCGAGTGCCTTGGAGGTTTCCCTGACCTCCCGT
GAGGATCAGAGACTGTCCCCCTTTTTTAACTTTGACAATTGACTTTGGTTTCCTTTTCTA
ATTTTTATTATTTTTTAAACAATCCAGGATGATCCCCAGCTCTGATTCCTTCAAGGCCCA
GCATGTCTGGGTCTCCATTCCACACTTTTCGGTTTGAGATGGCTCAGCCCTTTTTTCTTT
CTCCCACATCTGCTGCAGGCATGGCTGTCTCCTGCCCTCTCCGACCTGTATTCCAGTTCC
AGGTCCCTCATTCCTTTCCACAGTCCCCTCACCTTCTGATGCCTTAAATGCCAGGCCCAG
GCCCCCGGCCCTGCTGGCCAGAGCCTCTCGGATGCTGAGCTCTGGAAGCTTGACTCAGGA
CCAAATGGCTCTGACCTGGGGATTGGCCCTCTCTACCCTGGGTTCCTTATCGTGGGGACA
GTAGAAGGCCAAAACTGTGGTCTTGGCAAACCAGTCCCACCAGCCCTCTTGCCCAGGCCT
AGGTGCAGAGATGGGCTTTCTCTGCTGGCTTCAACCTGTCCTCTTTAGGGCATTGTGCAT
CTCACTGAGCCTCCGCTGTCTCCCCCATTTTGAAGATGAGCTCTGCCTCTTCATCCCCAA
GCCAGATCACCCGGAGCTGGCCTCCCTTTGGCCCAGTGCTGGAAAATTCAACAACATGCT
GATAAGCTCTGCCCCTGCTCACCAGCAGGGCCTCTTGGCCTGAGGTGACCCTGGCCAGAT
GGGCCACCAGCTTCCCTCCCCTGACTTAGGGGGTCCGCATCCACTCCACGGGGCGGGTAT
TCTCTTCCCAGTCTTCTCACACAGACCTTTGCTGAATTAAAGTTTGTAAGTAAATGGTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               394-779, - strand, RNAz p=0.999126
               

               
               914-1019, - strand, RNAz p=0.997984

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               394-779, - strand, RNAz p=0.999126
               

               
               914-1019, - strand, RNAz p=0.997984

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               619-735, - strand, RNAmicro p=0.999908
               

               
               602-713, + strand, RNAmicro p=0.991744

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               619-735, - strand, RNAmicro p=0.999908
               

               
               602-713, + strand, RNAmicro p=0.991744

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               394-1140, gnl|bosTau2|chr7 (9499663-9500434)
               

               
               394-1140, gnl|Hg17|chr19 (10288665-10287896)
               

               
               394-1140, gnl|Mm7|chr9 (20951428-20950727)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               394-1140, gnl|bosTau2|chr7 (9499663-9500434)
               

               
               394-1140, gnl|Hg17|chr19 (10288665-10287896)
               

               
               394-1140, gnl|Mm7|chr9 (20951428-20950727)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               ece (0.45861)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               ebs (0.236602)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	394-779, - strand, RNAz p=0.999126
	914-1019, - strand, RNAz p=0.997984

	619-735, - strand, RNAmicro p=0.999908
	602-713, + strand, RNAmicro p=0.991744

	394-1140, gnl\|bosTau2\|chr7 (9499663-9500434)
	394-1140, gnl\|Hg17\|chr19 (10288665-10287896)
	394-1140, gnl\|Mm7\|chr9 (20951428-20950727)

	ece (0.45861)
	elu (0.385356)
	lnt (0.284616)
	pla (0.267344)
	eep (0.245128)
	ebs (0.236602)
	fty (0.17584)
	ill (0.175593)
	nje (0.16592)
	cje (0.165235)
	cli (0.152812)
	pty (0.142714)
	eru (0.120048)
	ecc (0.115035)