Non-Coding RNA Search

Ss1.1-Pig3-SRG8004I12.5

Sequence:


               
               TCCTGGCTTCTCTTCACATACATCTTCTTCAAAAGAAGGATGCTAAAGATCTAGGTCAGT
TCATGATTCTGCAATACTTGTTATATAATATACGCCTATCTTGTACAGCAGTAATTTGAT
GGTTATGAGAATCAAATCCATGAGGGAGTGAAACTATCAGAACTCTCAAGTTCAAGATGT
AGATTTTATGCCCCATACCGAGCATTTGGGGGTTAGGGAGGAAAAGGGTCAAAAATATAC
ATTTGCCACATGTAGTTATCAGATCAGCTCTCCATTGTTATTCTATTTTTCCTTACTTTG
ATCTTGCCAGGCTATCGTAATGACTGACAGTTGAAACTGCTTATTTTTTCTCTTGTGATT
TTAACACCTCTTAAAACGATGTGGCATTTTCAAGTTTGATCTAAGAAAGAATAATTCATT
TTCAAACCTTTGTTTAAAAATATGCTTTAGGTCATAAGCTCAGAATGAGGGCAGGGACCA
TGGTGGATTCTGGGGGTCAATGACATTTGATCTGTGAGTATGCCTGCAGTCTCCTGCAGT
TGCCTCTCACTGCCTGGGGACTAGGACTTCTGTGAAGAACACTTCACCTGCTCTATAGGG
CCAAAGGTCAAAACATAGCAATACTCGGGGAAAGAACACACAGGTCATGCTATGCTCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGGCTTCTCTTCACATACATCTTCTTCAAAAGAAGGATGCTAAAGATCTAGGTCAGT
TCATGATTCTGCAATACTTGTTATATAATATACGCCTATCTTGTACAGCAGTAATTTGAT
GGTTATGAGAATCAAATCCATGAGGGAGTGAAACTATCAGAACTCTCAAGTTCAAGATGT
AGATTTTATGCCCCATACCGAGCATTTGGGGGTTAGGGAGGAAAAGGGTCAAAAATATAC
ATTTGCCACATGTAGTTATCAGATCAGCTCTCCATTGTTATTCTATTTTTCCTTACTTTG
ATCTTGCCAGGCTATCGTAATGACTGACAGTTGAAACTGCTTATTTTTTCTCTTGTGATT
TTAACACCTCTTAAAACGATGTGGCATTTTCAAGTTTGATCTAAGAAAGAATAATTCATT
TTCAAACCTTTGTTTAAAAATATGCTTTAGGTCATAAGCTCAGAATGAGGGCAGGGACCA
TGGTGGATTCTGGGGGTCAATGACATTTGATCTGTGAGTATGCCTGCAGTCTCCTGCAGT
TGCCTCTCACTGCCTGGGGACTAGGACTTCTGTGAAGAACACTTCACCTGCTCTATAGGG
CCAAAGGTCAAAACATAGCAATACTCGGGGAAAGAACACACAGGTCATGCTATGCTCCAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-656, gnl|bosTau2|chr18 (27441826-27442464)
               

               
               1-656, gnl|Hg17|chr16 (63537959-63537327)
               

               
               1-656, gnl|Mm7|chr8 (101227091-101226492)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-656, gnl|bosTau2|chr18 (27441826-27442464)
               

               
               1-656, gnl|Hg17|chr16 (63537959-63537327)
               

               
               1-656, gnl|Mm7|chr8 (101227091-101226492)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)

	1-656, gnl\|bosTau2\|chr18 (27441826-27442464)
	1-656, gnl\|Hg17\|chr16 (63537959-63537327)
	1-656, gnl\|Mm7\|chr8 (101227091-101226492)