Non-Coding RNA Search

Ss1.1-Pig3-SRG8004I13.3

Sequence:


               
               AGCTTTTCCAATTGATAGTTGCTATTTTGCAGATGGTTTTCAGTTCCCAAAAGAGGTCTT
GCTTTGAATAGCAGAGCTGGAAGGCTAGATGAATCATACTGTTGAAGGAAAACAACTTTA
GATTAACAAATATAAAAAACTTTTATAACCCTATCCATTCATTGTTATGTAGCTCTGTGT
TACAACCAAATGCCAGTGTAATAGAGCTTTCTGTAAATCACTCTTCCTCTTTTTTTTTGA
GAAAACTAGTTTTAATGTTTCTTTAAGAGAGTTGGTAAGCAAGATTGCAAAGGAACTGCT
TTGCAAAACTTGAGCCAGTCATCCCAGAATATCAGTTGATTCAAAGAACTGTGGCATCTG
AATTATTTAAAACAAAATCATTTCTGGGACAGGTCAAGACTTGGTTTGGGCAAGTCAGCT
AGAGTTCTGTGGGATCTGCTTGATCTCATACCTATTTTAAATACAGAAAAACAGATGACA
GATTTATTTATTGCAAAAACTGATGGAACAAGAACATGAGGCCCATGAAAATCCATTATC
TCGTGGGAGAGGGAGGGATTGGCATATATACACTATTACACATGGGATGGATGGTCAACG
GGGACCTGCTCTATAGCACAGGGGACTAACTCTACTCACTAGTCTATGAGGGAAAAGAAT
TTGAAAAAGAATGGATATGTATATTTGTGCAACTGAATCACTTTGATGTAAAGCAGAAAC
ACTGTAAAACTATATATGTCAATAAAATTTTTAAAAAATTTAAGAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTTTCCAATTGATAGTTGCTATTTTGCAGATGGTTTTCAGTTCCCAAAAGAGGTCTT
GCTTTGAATAGCAGAGCTGGAAGGCTAGATGAATCATACTGTTGAAGGAAAACAACTTTA
GATTAACAAATATAAAAAACTTTTATAACCCTATCCATTCATTGTTATGTAGCTCTGTGT
TACAACCAAATGCCAGTGTAATAGAGCTTTCTGTAAATCACTCTTCCTCTTTTTTTTTGA
GAAAACTAGTTTTAATGTTTCTTTAAGAGAGTTGGTAAGCAAGATTGCAAAGGAACTGCT
TTGCAAAACTTGAGCCAGTCATCCCAGAATATCAGTTGATTCAAAGAACTGTGGCATCTG
AATTATTTAAAACAAAATCATTTCTGGGACAGGTCAAGACTTGGTTTGGGCAAGTCAGCT
AGAGTTCTGTGGGATCTGCTTGATCTCATACCTATTTTAAATACAGAAAAACAGATGACA
GATTTATTTATTGCAAAAACTGATGGAACAAGAACATGAGGCCCATGAAAATCCATTATC
TCGTGGGAGAGGGAGGGATTGGCATATATACACTATTACACATGGGATGGATGGTCAACG
GGGACCTGCTCTATAGCACAGGGGACTAACTCTACTCACTAGTCTATGAGGGAAAAGAAT
TTGAAAAAGAATGGATATGTATATTTGTGCAACTGAATCACTTTGATGTAAAGCAGAAAC
ACTGTAAAACTATATATGTCAATAAAATTTTTAAAAAATTTAAGAAAT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-432, gnl|bosTau2|chr27 (10023076-10023498)
               

               
               1-432, gnl|Hg17|chr4 (185991607-185992048)
               

               
               1-432, gnl|Mm7|chr8 (45356221-45355785)
               


               
               555-737, gnl|bosTau2|chr7 (42335362-42335542)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-432, gnl|bosTau2|chr27 (10023076-10023498)
               

               
               1-432, gnl|Hg17|chr4 (185991607-185992048)
               

               
               1-432, gnl|Mm7|chr8 (45356221-45355785)
               


               
               555-737, gnl|bosTau2|chr7 (42335362-42335542)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               col (0.195008)
               

               
               sin (0.174948)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               sin (0.174948)

	1-432, gnl\|bosTau2\|chr27 (10023076-10023498)
	1-432, gnl\|Hg17\|chr4 (185991607-185992048)
	1-432, gnl\|Mm7\|chr8 (45356221-45355785)

	555-737, gnl\|bosTau2\|chr7 (42335362-42335542)