Non-Coding RNA Search

Ss1.1-Pig3-SRG8004I22.3

Sequence:


               
               AAAAAAAAAAAAAAAAATGAAGTGAGCCATCTTTTGTTCATTTAAAATGGTGTTTTGAAT
TTCGTATGCAGAAAACGTTTTGTTACATTGCAGATTTTAATGTATTTAATAAATGCAACA
TGCAGATTAAGTGCAGTGTATACTGAGTATTTAAATTAAAATGTACATTTCATAAATACA
GTTTCAAGAGAAAGCATCATTTTGTGTATACTAACACATTAAGTGTATGTCAGAAATTGA
TGTATAAAAATATATTTTAACACATTTTCTGAAATTAAACTGCAGTTTTGTTGAAATATT
TGGTCTATATGTGTTCAAAATTGGATTTGATTAGATTTGTATTTTCACAGTTCAAAATAT
TCCTTAAATGAAAAATCTGTTATTAATGACTTAATGATGGTTCTTAAATTTACAAAGTAA
AAATAATTTAAAGAATGCAAGAATGGTGAGCAATATTTGTACTCGATATTCATATTATAT
CAATGCATTTAAGTAGGAAATCCTTGTCTACCAAGACTTTTACTTGAATTCAGAAAGGTG
CCTGTAGAAATTAACATGCTCTGTATCTATAGCCAGCTAGCTAATCAGGAGTTAATGAGA
ATCAACAGTTAGCTCTGTGTTGAAAGAAGATAAGTGTTCTTTATCTGTTTAAAATAAAAA
ATTAGCCACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAATGAAGTGAGCCATCTTTTGTTCATTTAAAATGGTGTTTTGAAT
TTCGTATGCAGAAAACGTTTTGTTACATTGCAGATTTTAATGTATTTAATAAATGCAACA
TGCAGATTAAGTGCAGTGTATACTGAGTATTTAAATTAAAATGTACATTTCATAAATACA
GTTTCAAGAGAAAGCATCATTTTGTGTATACTAACACATTAAGTGTATGTCAGAAATTGA
TGTATAAAAATATATTTTAACACATTTTCTGAAATTAAACTGCAGTTTTGTTGAAATATT
TGGTCTATATGTGTTCAAAATTGGATTTGATTAGATTTGTATTTTCACAGTTCAAAATAT
TCCTTAAATGAAAAATCTGTTATTAATGACTTAATGATGGTTCTTAAATTTACAAAGTAA
AAATAATTTAAAGAATGCAAGAATGGTGAGCAATATTTGTACTCGATATTCATATTATAT
CAATGCATTTAAGTAGGAAATCCTTGTCTACCAAGACTTTTACTTGAATTCAGAAAGGTG
CCTGTAGAAATTAACATGCTCTGTATCTATAGCCAGCTAGCTAATCAGGAGTTAATGAGA
ATCAACAGTTAGCTCTGTGTTGAAAGAAGATAAGTGTTCTTTATCTGTTTAAAATAAAAA
ATTAGCCACAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               46-285, + strand, RNAz p=0.898587

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-285, + strand, RNAz p=0.898587

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-672, gnl|bosTau2|chr1 (75067342-75068006)
               

               
               7-672, gnl|Hg17|chr3 (151660317-151660965)
               

               
               7-672, gnl|Mm7|chr3 (58590204-58590860)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-672, gnl|bosTau2|chr1 (75067342-75068006)
               

               
               7-672, gnl|Hg17|chr3 (151660317-151660965)
               

               
               7-672, gnl|Mm7|chr3 (58590204-58590860)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               bfe (0.149858)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.149858)
               

               
               thg (0.126791)

	7-672, gnl\|bosTau2\|chr1 (75067342-75068006)
	7-672, gnl\|Hg17\|chr3 (151660317-151660965)
	7-672, gnl\|Mm7\|chr3 (58590204-58590860)