Non-Coding RNA Search

Ss1.1-Pig3-SRG8004J13.3

Sequence:


               
               TTTTTCTTCTTTAAGATTAAAAGATTGGAAGACCCGTTTGAGCTACTTCTTGCAAAACTC
CTCCTCTCCTGGGAAGCCCAAAACCGGCAAGAAAAGCAAACCGCAAACCTTCATCAAGTA
AGTTGAAAATCTCAGTCCTTGCAAAGCTAGGCCACCAGCTGCTGAACAGAAGGGGGAAAC
AGACAGGTGTGAGCTGACATGTGACCGTCTCTTGCAGGCCTTCTCCTGAGGAAGCACAGC
TGTGGGCAGAAGCATTTGATGAGCTGCTAGCCAGCAAATGTGAGTTAACCCCTTGAATTT
GGTCCTTTTCAAGGAGCCCAAGCGTCTAGAAAGGAGGAGCATCCGGCCCCAGGGAGTTTG
ACTTTACTGTCTCCAGCATCTGAGGCCTGTTTCTTCCCCCGCCGTTTCCCGGGGATTATC
CCTGGAAACGCAGGGCTTATTCACTCCAGGTGGGACGCAAAATCAGCGCCAAACTGGAAT
GGCCCTTGGTGTAAGCTTGAGCCAGCTTTTCCATTGCATACAGTGTTCTCAAGAGGCTTA
GTTCACACAGAGAACCAAAGCTCCCCCGTAAACGGCTGGGTCAACAGCAAAGCTGAGCAC
AGCAGGGCGCCACCTTAAGCATTTTGCAGACTGGCATCTTCGTCTCTGAAGAGCTCAGTT
CTAAAGCGGGAGTGAAATCTAGAAATCTTGCTTTCATCTAGAGATAAGAAAATTAGGGGG
CCAGGGCCAGGGAGGCCTAGGAGAAAAGTGAAGGGATTATGAGGTCCCTCAGTTCACGTT
CTTCATGCTTCCTCTCCTCTGCCCCCCAGATGGTCTTGCTGCATTCAGAGCTTTTTTGAA
ATCTGAATTCTGTGAAGAAAATATTGAATTCTGGCT------------CTTCAAAAAAAC
AAAGTCACCCNA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCTTCTTTAAGATTAAAAGATTGGAAGACCCGTTTGAGCTACTTCTTGCAAAACTC
CTCCTCTCCTGGGAAGCCCAAAACCGGCAAGAAAAGCAAACCGCAAACCTTCATCAAGTA
AGTTGAAAATCTCAGTCCTTGCAAAGCTAGGCCACCAGCTGCTGAACAGAAGGGGGAAAC
AGACAGGTGTGAGCTGACATGTGACCGTCTCTTGCAGGCCTTCTCCTGAGGAAGCACAGC
TGTGGGCAGAAGCATTTGATGAGCTGCTAGCCAGCAAATGTGAGTTAACCCCTTGAATTT
GGTCCTTTTCAAGGAGCCCAAGCGTCTAGAAAGGAGGAGCATCCGGCCCCAGGGAGTTTG
ACTTTACTGTCTCCAGCATCTGAGGCCTGTTTCTTCCCCCGCCGTTTCCCGGGGATTATC
CCTGGAAACGCAGGGCTTATTCACTCCAGGTGGGACGCAAAATCAGCGCCAAACTGGAAT
GGCCCTTGGTGTAAGCTTGAGCCAGCTTTTCCATTGCATACAGTGTTCTCAAGAGGCTTA
GTTCACACAGAGAACCAAAGCTCCCCCGTAAACGGCTGGGTCAACAGCAAAGCTGAGCAC
AGCAGGGCGCCACCTTAAGCATTTTGCAGACTGGCATCTTCGTCTCTGAAGAGCTCAGTT
CTAAAGCGGGAGTGAAATCTAGAAATCTTGCTTTCATCTAGAGATAAGAAAATTAGGGGG
CCAGGGCCAGGGAGGCCTAGGAGAAAAGTGAAGGGATTATGAGGTCCCTCAGTTCACGTT
CTTCATGCTTCCTCTCCTCTGCCCCCCAGATGGTCTTGCTGCATTCAGAGCTTTTTTGAA
ATCTGAATTCTGTGAAGAAAATATTGAATTCTGGCT------------CTTCAAAAAAAC
AAAGTCACCCNA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr16 (5005936-5005021)
               

               
               1-876, gnl|Hg17|chr1 (189510938-189511834)
               

               
               1-876, gnl|Mm7|chr1 (143929355-143928497)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr16 (5005936-5005021)
               

               
               1-876, gnl|Hg17|chr1 (189510938-189511834)
               

               
               1-876, gnl|Mm7|chr1 (143929355-143928497)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               spl (0.143184)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               cbl (0.114797)

	1-876, gnl\|bosTau2\|chr16 (5005936-5005021)
	1-876, gnl\|Hg17\|chr1 (189510938-189511834)
	1-876, gnl\|Mm7\|chr1 (143929355-143928497)