Non-Coding RNA Search

Ss1.1-Pig3-SRG8004J15.3

Sequence:


               
               CCGAGGGCGAGGCTGACCGAGCGTGTGCGTGTCCTCGCACTGTACCCACGAAGAGTCCGA
GGAGGAACCAGACGGCCTGAGCCGCCACAGCCACAGCAGCGGCGGGAGAGAACCTGACCG
AAACGGGGCGTCGCAGGGATGCAGGCGAATCAAACCCGAGAGGGGGCGCCTCCTCCCAGC
CCGCGCAGGCTGTGGGAGGCCACAGCAGGCCGCTGTGCAGATGGGGTTGCCCAGGTTCAA
GACAAACACCGTATGTTTACACCGAAAACCATGACACTCCCCTGACACCGGCTGCGCCCC
CCCCCCCCCGACACACTCTGGACAGACCTGCAAGACACGGGTCCCAGTGGCCACCGCGCA
GCCCGGCCCACGGCCCCGGAGCTCACTCAGAAAGGACCAGTGCTGCCAAGCCCAGTAGAA
AGGATTTATTTAAGCTCAACAAGTCTCACACCTTCCTTTAAATTCCATTTTTACAGTAAA
TGAGATTGTGTACGCGGCTCCTTCCCCATGCATGATCAGCGGGTATTAATCTACAAGTCT
CATTTTAATCGTGAAAAAATAAAGTGTTTCCCCTTTTAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAGGGCGAGGCTGACCGAGCGTGTGCGTGTCCTCGCACTGTACCCACGAAGAGTCCGA
GGAGGAACCAGACGGCCTGAGCCGCCACAGCCACAGCAGCGGCGGGAGAGAACCTGACCG
AAACGGGGCGTCGCAGGGATGCAGGCGAATCAAACCCGAGAGGGGGCGCCTCCTCCCAGC
CCGCGCAGGCTGTGGGAGGCCACAGCAGGCCGCTGTGCAGATGGGGTTGCCCAGGTTCAA
GACAAACACCGTATGTTTACACCGAAAACCATGACACTCCCCTGACACCGGCTGCGCCCC
CCCCCCCCCGACACACTCTGGACAGACCTGCAAGACACGGGTCCCAGTGGCCACCGCGCA
GCCCGGCCCACGGCCCCGGAGCTCACTCAGAAAGGACCAGTGCTGCCAAGCCCAGTAGAA
AGGATTTATTTAAGCTCAACAAGTCTCACACCTTCCTTTAAATTCCATTTTTACAGTAAA
TGAGATTGTGTACGCGGCTCCTTCCCCATGCATGATCAGCGGGTATTAATCTACAAGTCT
CATTTTAATCGTGAAAAAATAAAGTGTTTCCCCTTTTAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               367-577, gnl|bosTau2|chr25 (40167362-40167572)
               

               
               367-577, gnl|Hg17|chr7 (709378-709154)
               

               
               367-577, gnl|Mm7|chr5 (138242199-138241998)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               367-577, gnl|bosTau2|chr25 (40167362-40167572)
               

               
               367-577, gnl|Hg17|chr7 (709378-709154)
               

               
               367-577, gnl|Mm7|chr5 (138242199-138241998)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               col (0.195008)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)

	367-577, gnl\|bosTau2\|chr25 (40167362-40167572)
	367-577, gnl\|Hg17\|chr7 (709378-709154)
	367-577, gnl\|Mm7\|chr5 (138242199-138241998)

	col (0.195008)
	fbs (0.175346)
	fhi (0.169578)
	hlv (0.139256)
	ebs (0.118301)