Non-Coding RNA Search

Ss1.1-Pig3-SRG8004K18.3

Sequence:


               
               GGGACTTGAGAAGTGCCATGCATTTTTCTCCCATGAAACCTAATTCTGCAAGTTTGCTTG
CTAACCCACTGAGGTGCACTGCAGGGACCAGTGATAATGGCTGATGAAAATTGATGAATG
GTTGGTATGAGGTCAAAAAGCACTTGGGGATTAATAAATATGTACTGAGAAGCAAGAGCA
GGAGGAAAAGATGTCTTTTCCTTCCAGGTGAACTGAAATTTAGTTTGGCCTCAATTTGTT
TTCACAAAATATATATGAAGATAAAGATTTTTTTGGTTGAGCTTGTGTGATCAAACAGAA
TTCAAATTACACACAGCTAAGAGGCAGGATTTGTCAGCACCAGAAGTGGTTGCGAGAATG
AATCGCCATTTAGAGACAAGTGATTTTCGATTGCAGATATGTCTGTGTCTTCGGTTATGG
TATGAGAGGTGGTCTGTTCTTTCAATGTTAAGAGATTTTTAAACAAGAGTGGCTATTTTG
TCCCTATTTTAACTTTTTCATTTAACTATGTTAATCTACATAAATATACCTCAATCATGT
TTGGTGAGATTTTTCTTTTTGTGGAATTGCAGTTCACTTTATTTCCATACAAATAATGGT
AAAGTTTGTTTAATGGCTCCGAAGGGTCTTCCTCTTCTTTTTCTATTCTTTACTTTTTTA
TTTGGTTTCAGAAAAGTTCAGGTACTAGGATGCAAAGATTTAATTTGATGATTTGATGAA
AGGGATCTGTATTTCCATGTCAGATATTTTTACATTGAAATATGTGTCTCAATACTTATT
TTTATATTTTTGTATTTCTCTTTATTAGTATTATGGTCATTGGTAACAGTTTTATGTTTA
AGTATTTGAAATAAAAATTTTAAATTTGGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACTTGAGAAGTGCCATGCATTTTTCTCCCATGAAACCTAATTCTGCAAGTTTGCTTG
CTAACCCACTGAGGTGCACTGCAGGGACCAGTGATAATGGCTGATGAAAATTGATGAATG
GTTGGTATGAGGTCAAAAAGCACTTGGGGATTAATAAATATGTACTGAGAAGCAAGAGCA
GGAGGAAAAGATGTCTTTTCCTTCCAGGTGAACTGAAATTTAGTTTGGCCTCAATTTGTT
TTCACAAAATATATATGAAGATAAAGATTTTTTTGGTTGAGCTTGTGTGATCAAACAGAA
TTCAAATTACACACAGCTAAGAGGCAGGATTTGTCAGCACCAGAAGTGGTTGCGAGAATG
AATCGCCATTTAGAGACAAGTGATTTTCGATTGCAGATATGTCTGTGTCTTCGGTTATGG
TATGAGAGGTGGTCTGTTCTTTCAATGTTAAGAGATTTTTAAACAAGAGTGGCTATTTTG
TCCCTATTTTAACTTTTTCATTTAACTATGTTAATCTACATAAATATACCTCAATCATGT
TTGGTGAGATTTTTCTTTTTGTGGAATTGCAGTTCACTTTATTTCCATACAAATAATGGT
AAAGTTTGTTTAATGGCTCCGAAGGGTCTTCCTCTTCTTTTTCTATTCTTTACTTTTTTA
TTTGGTTTCAGAAAAGTTCAGGTACTAGGATGCAAAGATTTAATTTGATGATTTGATGAA
AGGGATCTGTATTTCCATGTCAGATATTTTTACATTGAAATATGTGTCTCAATACTTATT
TTTATATTTTTGTATTTCTCTTTATTAGTATTATGGTCATTGGTAACAGTTTTATGTTTA
AGTATTTGAAATAAAAATTTTAAATTTGGAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               113-287, + strand, RNAz p=0.990069

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-287, + strand, RNAz p=0.990069

Similar Transcript(s): 4 entry(ies)

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Similar Transcript(s): 4 entry(ies)

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               147-233, BX414727 Homo sapiens THYMUS Homo sapiens cDNA clone CS0CAP002YE14 
(emb|BX414727.2|), blast E-value=3e-21, identity=89.66% 
               

               
               113-267, LB01310.CR_G03 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV799874.1|), 
blast E-value=3e-40, identity=89.68% 
               

               
               113-267, LB01330.CR_C16 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV804795.1|), 
blast E-value=5.60519e-45, identity=90.32% 
               

               
               113-212, LB01226.CR_M18 GC_BGC-12 Bos taurus cDNA clone IMAGE (gb|DV846273.1|), 
blast E-value=1e-26, identity=91%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               147-233, BX414727 Homo sapiens THYMUS Homo sapiens cDNA clone CS0CAP002YE14 
(emb|BX414727.2|), blast E-value=3e-21, identity=89.66% 
               

               
               113-267, LB01310.CR_G03 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV799874.1|), 
blast E-value=3e-40, identity=89.68% 
               

               
               113-267, LB01330.CR_C16 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV804795.1|), 
blast E-value=5.60519e-45, identity=90.32% 
               

               
               113-212, LB01226.CR_M18 GC_BGC-12 Bos taurus cDNA clone IMAGE (gb|DV846273.1|), 
blast E-value=1e-26, identity=91%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000448, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000448, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-287, gnl|bosTau2|chr15 (41166683-41166399)
               

               
               3-287, gnl|Hg17|chr11 (36557030-36557314)
               

               
               3-287, gnl|Mm7|chr2 (101489988-101489641)
               


               
               321-872, gnl|bosTau2|chr15 (41166398-41165871)
               

               
               321-872, gnl|Hg17|chr11 (36557359-36557888)
               

               
               321-872, gnl|Mm7|chr2 (101489640-101488968)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-287, gnl|bosTau2|chr15 (41166683-41166399)
               

               
               3-287, gnl|Hg17|chr11 (36557030-36557314)
               

               
               3-287, gnl|Mm7|chr2 (101489988-101489641)
               


               
               321-872, gnl|bosTau2|chr15 (41166398-41165871)
               

               
               321-872, gnl|Hg17|chr11 (36557359-36557888)
               

               
               321-872, gnl|Mm7|chr2 (101489640-101488968)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               thg (2.7894)
               

               
               fty (0.527519)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (2.7894)
               

               
               fty (0.527519)

	147-233, BX414727 Homo sapiens THYMUS Homo sapiens cDNA clone CS0CAP002YE14 (emb\|BX414727.2\|), blast E-value=3e-21, identity=89.66%
	113-267, LB01310.CR_G03 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb\|DV799874.1\|), blast E-value=3e-40, identity=89.68%
	113-267, LB01330.CR_C16 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb\|DV804795.1\|), blast E-value=5.60519e-45, identity=90.32%
	113-212, LB01226.CR_M18 GC_BGC-12 Bos taurus cDNA clone IMAGE (gb\|DV846273.1\|), blast E-value=1e-26, identity=91%

	3-287, gnl\|bosTau2\|chr15 (41166683-41166399)
	3-287, gnl\|Hg17\|chr11 (36557030-36557314)
	3-287, gnl\|Mm7\|chr2 (101489988-101489641)

	321-872, gnl\|bosTau2\|chr15 (41166398-41165871)
	321-872, gnl\|Hg17\|chr11 (36557359-36557888)
	321-872, gnl\|Mm7\|chr2 (101489640-101488968)