Non-Coding RNA Search

Ss1.1-Pig3-SRG8004L15.3

Sequence:


               
               ATATAAATAAGCCACTCAGAAGGTATATTCCAGCATCAGAAAAGTACCCTAAACAGCTTC
AAAAACTGAGAGAAGAAAAAAAAGTAAGAAGGCAGATGGAACTGCTTCATTTGGTAGAAA
GAAATAATCCTGGACATATCTCTCCGAATAGAGGCACTTCACCAGAAGTTCTTCATTCAG
CTCATCAAGAAACTGAGCCAAGGTTTAAGTGGCAGCTCCTCAAAAAGGAAGAAGAGCCCC
GGAGGATTAATTCTTTCAGCAAGGAAAGATCTCAGTCACCACCAGTTCCAGCAGTGAAAA
ACAGAACTCAGCAAACTCAGACACTAAAAAACAGTAATTTCGCAGGAGATGGTCAGACAG
ACTCATCACCTGGGATTTCTGAACCACTCTATTTTATTCCCTATGTGCGAACCAATGAGA
TTTATTACCTTGATCCAGATGCACCATTGTCTAGGCCTTTAACCCAGGATCCTCAGTACC
CAAGTCCACACGACTGTGACCAAGAACAACAGCTGTTTGAGCAACTCAGGGACCCACTTC
TTAACCCCAACTTGGTGAAAAACAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAG
AACTGAGACAGGGCCTTCTCCAGAAGCAAAGGGAATTGGAAACTAATCTCATGCCTTTAG
CTGCAAATCAAGAAGAGAATTTTAGTTCTTTGTTTTAAATGTAGAAAATCAAATCCTTCA
CATTTGTGTTTTCCAAATTATAAAATGTGGTTGTTGCTCACTGTATTTTTCAAATAGTCT
ATTTTTAAAATGCTTATTTAAAACTTGTATATTACATAGTAAAATGCTGTTTGTGTGTAT
ATATACATTAAAAAAAAATAAAACAGACACTTTTGTAAAAAAAAAAAAAAAAAAAAAATT
TTTTTTCTTCTGCTATGTCACAGTCTGGGTATTTATCTACTTACCTTAAAGCAGTCTGGA
GTTTACAGACAACGTTCTTCCACACCTTTTTGCATATAGATTATTAATTGAAATATCACA
TATTTGCTCTATAAAAAATTTTAAAGGGTAAATAAAACTCATCCAAGGTTTTCTGAGGTG
CCAAAGGAAAAGGTCTGACATCCCAATTTTTGCTAAAATAGCCTAGACTGAGTTTAGGCT
TATGTGGAAATTTTTTTTTTCTTTTAAGTCCTTTTTTTAAAGTTTTCAAAAACATTTACA
AGTTATGATTAGTAATGGAAAGGCAGTTAGTAACATAAGAGGATTTAAAATTTACCTCCA
CCATGTACTTTTATTTGTTAGTTTAAAAAAAAAAGTTAGTTTTAGTACAGCACTTAAGTA
CTTAAGTGCATTACCAACTCAAAAATATACTTCCATTTTTCTAGCAATTTAAAAACCCAT
AGCAAAGTTGTCAAACTGTTTAATGCCTTTAACAGACACCTATCCTTTGAAACATGAATC
TGAATTTGGTTAAGTAAAGGACCACACAAGCACTAAAAATCTTAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATAAATAAGCCACTCAGAAGGTATATTCCAGCATCAGAAAAGTACCCTAAACAGCTTC
AAAAACTGAGAGAAGAAAAAAAAGTAAGAAGGCAGATGGAACTGCTTCATTTGGTAGAAA
GAAATAATCCTGGACATATCTCTCCGAATAGAGGCACTTCACCAGAAGTTCTTCATTCAG
CTCATCAAGAAACTGAGCCAAGGTTTAAGTGGCAGCTCCTCAAAAAGGAAGAAGAGCCCC
GGAGGATTAATTCTTTCAGCAAGGAAAGATCTCAGTCACCACCAGTTCCAGCAGTGAAAA
ACAGAACTCAGCAAACTCAGACACTAAAAAACAGTAATTTCGCAGGAGATGGTCAGACAG
ACTCATCACCTGGGATTTCTGAACCACTCTATTTTATTCCCTATGTGCGAACCAATGAGA
TTTATTACCTTGATCCAGATGCACCATTGTCTAGGCCTTTAACCCAGGATCCTCAGTACC
CAAGTCCACACGACTGTGACCAAGAACAACAGCTGTTTGAGCAACTCAGGGACCCACTTC
TTAACCCCAACTTGGTGAAAAACAGGGATCGACAGCAAGCAATCCTTAAGGGACTTTCAG
AACTGAGACAGGGCCTTCTCCAGAAGCAAAGGGAATTGGAAACTAATCTCATGCCTTTAG
CTGCAAATCAAGAAGAGAATTTTAGTTCTTTGTTTTAAATGTAGAAAATCAAATCCTTCA
CATTTGTGTTTTCCAAATTATAAAATGTGGTTGTTGCTCACTGTATTTTTCAAATAGTCT
ATTTTTAAAATGCTTATTTAAAACTTGTATATTACATAGTAAAATGCTGTTTGTGTGTAT
ATATACATTAAAAAAAAATAAAACAGACACTTTTGTAAAAAAAAAAAAAAAAAAAAAATT
TTTTTTCTTCTGCTATGTCACAGTCTGGGTATTTATCTACTTACCTTAAAGCAGTCTGGA
GTTTACAGACAACGTTCTTCCACACCTTTTTGCATATAGATTATTAATTGAAATATCACA
TATTTGCTCTATAAAAAATTTTAAAGGGTAAATAAAACTCATCCAAGGTTTTCTGAGGTG
CCAAAGGAAAAGGTCTGACATCCCAATTTTTGCTAAAATAGCCTAGACTGAGTTTAGGCT
TATGTGGAAATTTTTTTTTTCTTTTAAGTCCTTTTTTTAAAGTTTTCAAAAACATTTACA
AGTTATGATTAGTAATGGAAAGGCAGTTAGTAACATAAGAGGATTTAAAATTTACCTCCA
CCATGTACTTTTATTTGTTAGTTTAAAAAAAAAAGTTAGTTTTAGTACAGCACTTAAGTA
CTTAAGTGCATTACCAACTCAAAAATATACTTCCATTTTTCTAGCAATTTAAAAACCCAT
AGCAAAGTTGTCAAACTGTTTAATGCCTTTAACAGACACCTATCCTTTGAAACATGAATC
TGAATTTGGTTAAGTAAAGGACCACACAAGCACTAAAAATCTTAATTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26343291|dbj|BAC35302.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26343291|dbj|BAC35302.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-161, - strand, RNAz p=0.908085

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-161, - strand, RNAz p=0.908085

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               3-228, gnl|bosTau2|chr22 (32585413-32585638)
               

               
               3-228, gnl|Hg17|chr3 (56626449-56626674)
               

               
               3-228, gnl|Mm7|chr14 (24919448-24919229)
               


               
               254-490, gnl|bosTau2|chr22 (32587096-32587350)
               

               
               254-490, gnl|Hg17|chr3 (56628326-56628593)
               

               
               254-490, gnl|Mm7|chr14 (24917089-24916834)
               


               
               609-1479, gnl|bosTau2|chr22 (32588958-32589798)
               

               
               609-1479, gnl|Hg17|chr3 (56630597-56631510)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-228, gnl|bosTau2|chr22 (32585413-32585638)
               

               
               3-228, gnl|Hg17|chr3 (56626449-56626674)
               

               
               3-228, gnl|Mm7|chr14 (24919448-24919229)
               


               
               254-490, gnl|bosTau2|chr22 (32587096-32587350)
               

               
               254-490, gnl|Hg17|chr3 (56628326-56628593)
               

               
               254-490, gnl|Mm7|chr14 (24917089-24916834)
               


               
               609-1479, gnl|bosTau2|chr22 (32588958-32589798)
               

               
               609-1479, gnl|Hg17|chr3 (56630597-56631510)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               gul (0.355177)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               lyg (0.266205)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               lyg (0.266205)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)

	3-228, gnl\|bosTau2\|chr22 (32585413-32585638)
	3-228, gnl\|Hg17\|chr3 (56626449-56626674)
	3-228, gnl\|Mm7\|chr14 (24919448-24919229)

	254-490, gnl\|bosTau2\|chr22 (32587096-32587350)
	254-490, gnl\|Hg17\|chr3 (56628326-56628593)
	254-490, gnl\|Mm7\|chr14 (24917089-24916834)

	609-1479, gnl\|bosTau2\|chr22 (32588958-32589798)
	609-1479, gnl\|Hg17\|chr3 (56630597-56631510)

	gul (0.355177)
	cte (0.29274)
	hyp (0.285673)
	lyg (0.266205)
	cbe (0.239234)
	mgp (0.230681)
	aor (0.195274)
	fty (0.17584)
	fco (0.157208)
	lnt (0.142308)
	thg (0.126791)