Non-Coding RNA Search

Ss1.1-Pig3-SRG8004M09.3

Sequence:


               
               TGTGCTTTAAGTACTGCTTCAAATGAGACAAGTCTGCATTTATTTGTGCAGGAAACCATC
TATTTAATTGTTCTAGAGTTTAGCATTTAAAAATTGTTTGAAAGGTCCAAATCAGCTGAA
ATCGACTGCCTCGATGATCACTCAGAGGGGGACTCGGGAGTAAGGACACTGCATTTTCTC
CCAGATCTCCAAGCCCAGTTGAAAAGTCACGCTGACACAGGGTACAAACAGCTGTCCAAA
ATTATATCAGCCCTGCAATTGTGGTGACAAGATGTTGTACCTGGACATTCCGAAATTAAA
ATTTGGCAATGAAAATGCTACAAAGATTTCTGATAACTTTTAGCTACCACTACCTTAAAA
ATAATAGAGTGATGATTTCCTTTATTTCCTAGAAGAATTTATTTTATAAATACTTTGTTT
ACATTTTAGATTGTATTTGTCCTTACTGAATTAAAAAATGATGAATCTAGTTTGAATCAG
CTGTTATTCCAAGCTATCATGCTTAAGCTATGTCAACAGCATTTATTTGTACTAATGCTA
ATATTTCCATCAAAATTTGCCTGTGGAATATATACAGTTCTTAATTTTAAAACGTCAGTT
CTTGAGATATACTGTATGAAGCTATTGTCAGCTTCTCTATTTCAAAATGCAATCCGCATA
TAACTACATTGATATTAGAAAATTTTGTTTTTTTTAACTATATTGATGTATGATAAAGAT
GATCTAATTTGTGAATGCATATGCGTGTGTGGTTACTTTTTATAATGTGAAATAATAATG
AATTGACTCAAAATAAAACATAGGTTAATGAGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCTTTAAGTACTGCTTCAAATGAGACAAGTCTGCATTTATTTGTGCAGGAAACCATC
TATTTAATTGTTCTAGAGTTTAGCATTTAAAAATTGTTTGAAAGGTCCAAATCAGCTGAA
ATCGACTGCCTCGATGATCACTCAGAGGGGGACTCGGGAGTAAGGACACTGCATTTTCTC
CCAGATCTCCAAGCCCAGTTGAAAAGTCACGCTGACACAGGGTACAAACAGCTGTCCAAA
ATTATATCAGCCCTGCAATTGTGGTGACAAGATGTTGTACCTGGACATTCCGAAATTAAA
ATTTGGCAATGAAAATGCTACAAAGATTTCTGATAACTTTTAGCTACCACTACCTTAAAA
ATAATAGAGTGATGATTTCCTTTATTTCCTAGAAGAATTTATTTTATAAATACTTTGTTT
ACATTTTAGATTGTATTTGTCCTTACTGAATTAAAAAATGATGAATCTAGTTTGAATCAG
CTGTTATTCCAAGCTATCATGCTTAAGCTATGTCAACAGCATTTATTTGTACTAATGCTA
ATATTTCCATCAAAATTTGCCTGTGGAATATATACAGTTCTTAATTTTAAAACGTCAGTT
CTTGAGATATACTGTATGAAGCTATTGTCAGCTTCTCTATTTCAAAATGCAATCCGCATA
TAACTACATTGATATTAGAAAATTTTGTTTTTTTTAACTATATTGATGTATGATAAAGAT
GATCTAATTTGTGAATGCATATGCGTGTGTGGTTACTTTTTATAATGTGAAATAATAATG
AATTGACTCAAAATAAAACATAGGTTAATGAGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               552-670, - strand, RNAz p=0.541923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               552-670, - strand, RNAz p=0.541923

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-813, gnl|bosTau2|chr21 (38872426-38873246)
               

               
               1-813, gnl|Hg17|chr14 (93815012-93815824)
               

               
               1-813, gnl|Mm7|chr12 (101107193-101107959)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-813, gnl|bosTau2|chr21 (38872426-38873246)
               

               
               1-813, gnl|Hg17|chr14 (93815012-93815824)
               

               
               1-813, gnl|Mm7|chr12 (101107193-101107959)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbe (0.478469)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	1-813, gnl\|bosTau2\|chr21 (38872426-38873246)
	1-813, gnl\|Hg17\|chr14 (93815012-93815824)
	1-813, gnl\|Mm7\|chr12 (101107193-101107959)

	cbe (0.478469)
	cte (0.29274)
	fce (0.271592)
	fcc (0.197785)
	lyg (0.133103)
	ret (0.128733)
	spc (0.113366)