Non-Coding RNA Search

Ss1.1-Pig3-SRG8004N19.3

Sequence:


               
               GAGAGAGAGAGAAGAAAAGGACCAGTCGACTCACAAGTGGATGGTATATGTCCGAGGGTC
TCGCAGAGAACCCAGCATTAATCATTTTGTCAAGAAAGTTTGGTTCTTTCTTCATCCCAG
CTATAAACCAAATGACCTTGTGGAAGTTAGAGAACCTCCTTTTCACTTGACCAGGAGAGG
CTGGGGTGAGTTTCCTGTCAGAGTTCAAGTTCACTTTAAGGACAGCCAGAACAAGCGGAT
AGATATCATACATAATCTGAAGCTGGACAGAACTTACACTGGCTTACAGACTCTTGGAGC
AGAGACGGTGGTGGATGTTGAGCTCCACCGGCATTCTCTTGGAGAAGACTCTGCTTACCC
TCGGTCATCTGAGTCAGACATCTCAGATGCCCCACCATCTTTGCCTTTGACCATTCCAGC
CCCTGTGAAGGCTTCCTCACCGATAAAACCATCACACGACCCAGTACCTGATAGCTCCGT
CGAGAAAGAAGGATTCCCAGCCAGTACTGAAGCTGAGAGACACACGACATTTTATTCTTT
GCCATCTTCAGTGGAACGAACACCCACCAAAATGACAACATCCCAGAAGGTTACCTTTTG
TTCTCATGGCAATTCAGCTTTTCAGCCAATAGCATCAAGTTGCAAAATTGTGCCGCAAAG
TCAAGTTCCTAATCCTGAGTCACCTGGAAAGTCCTTCCAGCCTATCACCATGAGCTGCAA
GATTGTCTCAGGTTCCCCTATATCAACCCCAAGTCCATCGCCATTGCCTCGAACCCCAAC
TTCCACTCCAGTCCATGTGAAGCAAGGCACTACCAGTTCTGTTATTAATAATCCTTATGT
TATCGTGGACAAGCCAGGGCAGGTTATTGGAGCCACCACTCCTACTGCAGGAAGTCCTAC
CAGCAAGCTCTCAACTGCCTCTCAGGCTTCCCAAGGAACAGGTTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAGAGAGAAGAAAAGGACCAGTCGACTCACAAGTGGATGGTATATGTCCGAGGGTC
TCGCAGAGAACCCAGCATTAATCATTTTGTCAAGAAAGTTTGGTTCTTTCTTCATCCCAG
CTATAAACCAAATGACCTTGTGGAAGTTAGAGAACCTCCTTTTCACTTGACCAGGAGAGG
CTGGGGTGAGTTTCCTGTCAGAGTTCAAGTTCACTTTAAGGACAGCCAGAACAAGCGGAT
AGATATCATACATAATCTGAAGCTGGACAGAACTTACACTGGCTTACAGACTCTTGGAGC
AGAGACGGTGGTGGATGTTGAGCTCCACCGGCATTCTCTTGGAGAAGACTCTGCTTACCC
TCGGTCATCTGAGTCAGACATCTCAGATGCCCCACCATCTTTGCCTTTGACCATTCCAGC
CCCTGTGAAGGCTTCCTCACCGATAAAACCATCACACGACCCAGTACCTGATAGCTCCGT
CGAGAAAGAAGGATTCCCAGCCAGTACTGAAGCTGAGAGACACACGACATTTTATTCTTT
GCCATCTTCAGTGGAACGAACACCCACCAAAATGACAACATCCCAGAAGGTTACCTTTTG
TTCTCATGGCAATTCAGCTTTTCAGCCAATAGCATCAAGTTGCAAAATTGTGCCGCAAAG
TCAAGTTCCTAATCCTGAGTCACCTGGAAAGTCCTTCCAGCCTATCACCATGAGCTGCAA
GATTGTCTCAGGTTCCCCTATATCAACCCCAAGTCCATCGCCATTGCCTCGAACCCCAAC
TTCCACTCCAGTCCATGTGAAGCAAGGCACTACCAGTTCTGTTATTAATAATCCTTATGT
TATCGTGGACAAGCCAGGGCAGGTTATTGGAGCCACCACTCCTACTGCAGGAAGTCCTAC
CAGCAAGCTCTCAACTGCCTCTCAGGCTTCCCAAGGAACAGGTTCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61878835|ref|XP_610848.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878835|ref|XP_610848.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               6-150, gnl|bosTau2|chr1 (51878048-51878192)
               

               
               6-150, gnl|Hg17|chr3 (184929197-184929341)
               

               
               6-150, gnl|Mm7|chr16 (19712014-19712158)
               


               
               486-733, gnl|bosTau2|chr1 (51895277-51895524)
               

               
               486-733, gnl|Hg17|chr3 (184954610-184954857)
               

               
               486-733, gnl|Mm7|chr16 (19736266-19736513)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-150, gnl|bosTau2|chr1 (51878048-51878192)
               

               
               6-150, gnl|Hg17|chr3 (184929197-184929341)
               

               
               6-150, gnl|Mm7|chr16 (19712014-19712158)
               


               
               486-733, gnl|bosTau2|chr1 (51895277-51895524)
               

               
               486-733, gnl|Hg17|chr3 (184954610-184954857)
               

               
               486-733, gnl|Mm7|chr16 (19736266-19736513)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	6-150, gnl\|bosTau2\|chr1 (51878048-51878192)
	6-150, gnl\|Hg17\|chr3 (184929197-184929341)
	6-150, gnl\|Mm7\|chr16 (19712014-19712158)

	486-733, gnl\|bosTau2\|chr1 (51895277-51895524)
	486-733, gnl\|Hg17\|chr3 (184954610-184954857)
	486-733, gnl\|Mm7\|chr16 (19736266-19736513)