Non-Coding RNA Search

Ss1.1-Pig3-SRG8004O20.3

Sequence:


               
               CGAGGCCTGCAGGTTGGGTACCGAAGTGTCGACGATGACCCCAGGATGAAGCACTTCCTC
AGCGTCGGCAAACTGCAGAGCGACAACGAGTACAAGAAGGACTTCGCCAAGAGTCGGTCC
CAGTTCCACAGCGGCCCGGACCAGCCTGGCTTCCTCCAGGCCAAGAGGAGCCAGCAGCTG
GCCAGCGATGTGAGCTACCGGCAGCCTCTGCCCCAGCCCACTTGCGACCCAGAGCAGCTG
GGCCTGAAGCACGCACGGAAGGCCCACCAGCTGCAGAGCGATGTCAAGTACAAATCAGAT
TTGAACCTGACCCGAGGTATTGGCTGGACACCTCCTGGCTCCTACAAAGTGGAGATGGCT
CGGCGGGCTGCAGAACTGGCCAACGCCAGGGGTCTCCGGGGGGCTTACGGGGGGCCGGAG
GCTGTGGAGACTGGTGATAATCAGAGGGGGGACGTGAACCCAGATGCCACCGAGATTCTG
CACGTCAAAAGGAGGAGGGCCTTGCCATTGTGAGTGGGCAGCATCCACCCAGGATTCTTG
GGAGTGAAGCTGGAGAGGAAATTTGCACGCCAGAGGCATGACTTCAGTTGGGGCAACTGT
GAAAAGGGCTCAGCGGCCCTTCCCCCCCCAGCCCCCTTTATTAAAATAACATTTCGGAAA
GCGGGTGGAGAAGTGTGTTTTGGTCCCTGTCGAATACCCACAAGTTGGATGCCGGCTCTG
TTGCATGCGTGCTGAGTGTCTGGGATGAGGAATAAAGATGGAAAGGTGGCCGTCTCCAAC
GCTGACCCTCGGAAGTCTCGCATTTGCACATGTCCAAGGTGAAGGCAGTCTGTGAACACT
GATTTTCTAGAAGGTACAGGTGTGCAAAGGGAAGCAAACATCCTATATTTCAGGTTGATT
CATGTCTAGCTTTCCCAGCGGGAGCCTGAGGAAGTGGCGGACATGCTGGTCCCCTGCTGG
CCACCAGTGGTCTCTGCTTAGAACGTAGTCACCCAGAGGCTCCACGGGGTGCCCGCCACT
GCCCACGAGGCCTCACCTGATCTGAGTATTATCGAGGAGGGGCCGTGAGCTTCGGAAGAC
CCCCTAGAAGCTGGCCTCCCTTTCCATGGTGGCTCTGATCCAATTCAGGAATGTGGTCAC
TTGGGTGTACACCCCTGGCTTCTTCCCACACTCCAGGCCCCAGCTCACTATCCCATACAC
GTAGTAGGCATCATCCTTCTCACAGGTCAGGGGGCCTCCAGAGTCACCCTGGCAGGAGTC
TTGCCCAGGCTTCTGGAGGTTTCCGGCACAGATCATGTTGTCATCGAGCATGTGGTCATA
GAGCCGGCGGGAGTTGCACACAGCATTGCTGATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGGCCTGCAGGTTGGGTACCGAAGTGTCGACGATGACCCCAGGATGAAGCACTTCCTC
AGCGTCGGCAAACTGCAGAGCGACAACGAGTACAAGAAGGACTTCGCCAAGAGTCGGTCC
CAGTTCCACAGCGGCCCGGACCAGCCTGGCTTCCTCCAGGCCAAGAGGAGCCAGCAGCTG
GCCAGCGATGTGAGCTACCGGCAGCCTCTGCCCCAGCCCACTTGCGACCCAGAGCAGCTG
GGCCTGAAGCACGCACGGAAGGCCCACCAGCTGCAGAGCGATGTCAAGTACAAATCAGAT
TTGAACCTGACCCGAGGTATTGGCTGGACACCTCCTGGCTCCTACAAAGTGGAGATGGCT
CGGCGGGCTGCAGAACTGGCCAACGCCAGGGGTCTCCGGGGGGCTTACGGGGGGCCGGAG
GCTGTGGAGACTGGTGATAATCAGAGGGGGGACGTGAACCCAGATGCCACCGAGATTCTG
CACGTCAAAAGGAGGAGGGCCTTGCCATTGTGAGTGGGCAGCATCCACCCAGGATTCTTG
GGAGTGAAGCTGGAGAGGAAATTTGCACGCCAGAGGCATGACTTCAGTTGGGGCAACTGT
GAAAAGGGCTCAGCGGCCCTTCCCCCCCCAGCCCCCTTTATTAAAATAACATTTCGGAAA
GCGGGTGGAGAAGTGTGTTTTGGTCCCTGTCGAATACCCACAAGTTGGATGCCGGCTCTG
TTGCATGCGTGCTGAGTGTCTGGGATGAGGAATAAAGATGGAAAGGTGGCCGTCTCCAAC
GCTGACCCTCGGAAGTCTCGCATTTGCACATGTCCAAGGTGAAGGCAGTCTGTGAACACT
GATTTTCTAGAAGGTACAGGTGTGCAAAGGGAAGCAAACATCCTATATTTCAGGTTGATT
CATGTCTAGCTTTCCCAGCGGGAGCCTGAGGAAGTGGCGGACATGCTGGTCCCCTGCTGG
CCACCAGTGGTCTCTGCTTAGAACGTAGTCACCCAGAGGCTCCACGGGGTGCCCGCCACT
GCCCACGAGGCCTCACCTGATCTGAGTATTATCGAGGAGGGGCCGTGAGCTTCGGAAGAC
CCCCTAGAAGCTGGCCTCCCTTTCCATGGTGGCTCTGATCCAATTCAGGAATGTGGTCAC
TTGGGTGTACACCCCTGGCTTCTTCCCACACTCCAGGCCCCAGCTCACTATCCCATACAC
GTAGTAGGCATCATCCTTCTCACAGGTCAGGGGGCCTCCAGAGTCACCCTGGCAGGAGTC
TTGCCCAGGCTTCTGGAGGTTTCCGGCACAGATCATGTTGTCATCGAGCATGTGGTCATA
GAGCCGGCGGGAGTTGCACACAGCATTGCTGATCAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               120-284, + strand, RNAz p=0.921516
               

               
               525-643, - strand, RNAz p=0.550306
               

               
               916-1105, + strand, RNAz p=0.983936

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-284, + strand, RNAz p=0.921516
               

               
               525-643, - strand, RNAz p=0.550306
               

               
               916-1105, + strand, RNAz p=0.983936

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               127-192, - strand, RNAmicro p=0.972644

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               127-192, - strand, RNAmicro p=0.972644

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK056605, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK056605, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-284, gnl|bosTau2|chr26 (22966848-22967131)
               

               
               1-284, gnl|canFam2|chr28 (27524453-27524781)
               

               
               1-284, gnl|danRer3|chr9 (14968228-14967906)
               

               
               1-284, gnl|dasNov1|scaffold_1703 (51124-51453)
               

               
               1-284, gnl|echTel1|scaffold_297528 (77614-77286)
               

               
               1-284, gnl|fr1|chrUn (213641365-213641042)
               

               
               1-284, gnl|galGal2|chr6 (26510497-26510816)
               

               
               1-284, gnl|hg17|chr10 (115340317-115340646)
               

               
               1-284, gnl|Hg17|chr10 (115340608-115340325)
               

               
               1-284, gnl|loxAfr1|scaffold_38205 (10990-11321)
               

               
               1-284, gnl|mm7|chr19 (56236688-56237017)
               

               
               1-284, gnl|Mm7|chr19 (56236979-56236696)
               

               
               1-284, gnl|monDom2|scaffold_14 (48644274-48643938)
               

               
               1-284, gnl|oryCun1|scaffold_214509 (371542-371872)
               

               
               1-284, gnl|panTro1|chr8 (117479208-117479537)
               

               
               1-284, gnl|rheMac2|chr9 (113257075-113257404)
               

               
               1-284, gnl|rn3|chr1 (262804134-262804463)
               

               
               1-284, gnl|tetNig1|chr2 (6384097-6383774)
               

               
               1-284, gnl|xenTro1|scaffold_510 (384568-384246)
               


               
               409-1250, gnl|bosTau2|chr26 (22968745-22969585)
               

               
               409-1250, gnl|Hg17|chr10 (115338828-115337952)
               

               
               409-1250, gnl|Mm7|chr19 (56235277-56234444)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-284, gnl|bosTau2|chr26 (22966848-22967131)
               

               
               1-284, gnl|canFam2|chr28 (27524453-27524781)
               

               
               1-284, gnl|danRer3|chr9 (14968228-14967906)
               

               
               1-284, gnl|dasNov1|scaffold_1703 (51124-51453)
               

               
               1-284, gnl|echTel1|scaffold_297528 (77614-77286)
               

               
               1-284, gnl|fr1|chrUn (213641365-213641042)
               

               
               1-284, gnl|galGal2|chr6 (26510497-26510816)
               

               
               1-284, gnl|hg17|chr10 (115340317-115340646)
               

               
               1-284, gnl|Hg17|chr10 (115340608-115340325)
               

               
               1-284, gnl|loxAfr1|scaffold_38205 (10990-11321)
               

               
               1-284, gnl|mm7|chr19 (56236688-56237017)
               

               
               1-284, gnl|Mm7|chr19 (56236979-56236696)
               

               
               1-284, gnl|monDom2|scaffold_14 (48644274-48643938)
               

               
               1-284, gnl|oryCun1|scaffold_214509 (371542-371872)
               

               
               1-284, gnl|panTro1|chr8 (117479208-117479537)
               

               
               1-284, gnl|rheMac2|chr9 (113257075-113257404)
               

               
               1-284, gnl|rn3|chr1 (262804134-262804463)
               

               
               1-284, gnl|tetNig1|chr2 (6384097-6383774)
               

               
               1-284, gnl|xenTro1|scaffold_510 (384568-384246)
               


               
               409-1250, gnl|bosTau2|chr26 (22968745-22969585)
               

               
               409-1250, gnl|Hg17|chr10 (115338828-115337952)
               

               
               409-1250, gnl|Mm7|chr19 (56235277-56234444)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               mas (0.630915)
               

               
               nms (0.427716)
               

               
               hlv (0.278513)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cli (0.152812)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.630915)
               

               
               nms (0.427716)
               

               
               hlv (0.278513)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               cli (0.152812)

	120-284, + strand, RNAz p=0.921516
	525-643, - strand, RNAz p=0.550306
	916-1105, + strand, RNAz p=0.983936

	1-284, gnl\|bosTau2\|chr26 (22966848-22967131)
	1-284, gnl\|canFam2\|chr28 (27524453-27524781)
	1-284, gnl\|danRer3\|chr9 (14968228-14967906)
	1-284, gnl\|dasNov1\|scaffold_1703 (51124-51453)
	1-284, gnl\|echTel1\|scaffold_297528 (77614-77286)
	1-284, gnl\|fr1\|chrUn (213641365-213641042)
	1-284, gnl\|galGal2\|chr6 (26510497-26510816)
	1-284, gnl\|hg17\|chr10 (115340317-115340646)
	1-284, gnl\|Hg17\|chr10 (115340608-115340325)
	1-284, gnl\|loxAfr1\|scaffold_38205 (10990-11321)
	1-284, gnl\|mm7\|chr19 (56236688-56237017)
	1-284, gnl\|Mm7\|chr19 (56236979-56236696)
	1-284, gnl\|monDom2\|scaffold_14 (48644274-48643938)
	1-284, gnl\|oryCun1\|scaffold_214509 (371542-371872)
	1-284, gnl\|panTro1\|chr8 (117479208-117479537)
	1-284, gnl\|rheMac2\|chr9 (113257075-113257404)
	1-284, gnl\|rn3\|chr1 (262804134-262804463)
	1-284, gnl\|tetNig1\|chr2 (6384097-6383774)
	1-284, gnl\|xenTro1\|scaffold_510 (384568-384246)

	409-1250, gnl\|bosTau2\|chr26 (22968745-22969585)
	409-1250, gnl\|Hg17\|chr10 (115338828-115337952)
	409-1250, gnl\|Mm7\|chr19 (56235277-56234444)

	mas (0.630915)
	nms (0.427716)
	hlv (0.278513)
	nep (0.183925)
	ton (0.1755)
	cli (0.152812)