Non-Coding RNA Search

Ss1.1-Pig3-SRG8004P20.5

Sequence:


               
               CCTGGCAGGACTGGCCACTGCAGGTAATTATGGCCTCTGAAGCAGCTGGAGGAGTTATTT
GTTTCGACCAGAAGCTGAGAGTGTTTGATGCGGGAGTGAAAACTGTGGACCCCTGGTCTC
TGGTCCTCAAGCACCTGCATAAATGGCTGGACAGGAGAGTTGTGCGGGCTTTGGTACAGC
TCAGCAAAATAATTTTTACTGGTACTGGCAAAGAGTGAAGCCGGACTCCCAGCCCTGCCT
CAGTTACTCCTTTGGCAACTGGTTCGGGCAACAGCACAGTGGTTGTTCTCCTTCTGGCTA
CAGCTGTGGCTTTGCAATGGCTGGAAATGGACCCAACCTTTATTCTGCACCTGAGACCCC
AGGATGCACAGCTGGAACGTGGCTTCCACCCAAGGAAACCACAGCTCTGGCTGAAAACCA
AGATGAAGATTCACTAGAAGATCCAAACCTTCATTTGAATATTGACGCGTCAAACGAAGA
GTTTATGGTGAAAAGCGAAGAACTCTACGACTCGCTCATGAATTGCCACTGGCAGCCTCT
GGATACAGTTCATTCTGAAATCCCCGATGAGATCCCACACAAACAAAATGTTCACCCAGC
TACCCAGCTATCACATTAATCCTATCGTATTTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCAGGACTGGCCACTGCAGGTAATTATGGCCTCTGAAGCAGCTGGAGGAGTTATTT
GTTTCGACCAGAAGCTGAGAGTGTTTGATGCGGGAGTGAAAACTGTGGACCCCTGGTCTC
TGGTCCTCAAGCACCTGCATAAATGGCTGGACAGGAGAGTTGTGCGGGCTTTGGTACAGC
TCAGCAAAATAATTTTTACTGGTACTGGCAAAGAGTGAAGCCGGACTCCCAGCCCTGCCT
CAGTTACTCCTTTGGCAACTGGTTCGGGCAACAGCACAGTGGTTGTTCTCCTTCTGGCTA
CAGCTGTGGCTTTGCAATGGCTGGAAATGGACCCAACCTTTATTCTGCACCTGAGACCCC
AGGATGCACAGCTGGAACGTGGCTTCCACCCAAGGAAACCACAGCTCTGGCTGAAAACCA
AGATGAAGATTCACTAGAAGATCCAAACCTTCATTTGAATATTGACGCGTCAAACGAAGA
GTTTATGGTGAAAAGCGAAGAACTCTACGACTCGCTCATGAATTGCCACTGGCAGCCTCT
GGATACAGTTCATTCTGAAATCCCCGATGAGATCCCACACAAACAAAATGTTCACCCAGC
TACCCAGCTATCACATTAATCCTATCGTATTTTGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958878|emb|CAI14000.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958878|emb|CAI14000.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               362-481, - strand, RNAz p=0.87534
               

               
               518-635, - strand, RNAz p=0.994077

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-481, - strand, RNAz p=0.87534
               

               
               518-635, - strand, RNAz p=0.994077

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               202-635, gnl|bosTau2|chr26 (17558014-17557586)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               202-635, gnl|bosTau2|chr26 (17558014-17557586)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               sto (0.179824)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.179824)

	362-481, - strand, RNAz p=0.87534
	518-635, - strand, RNAz p=0.994077