Non-Coding RNA Search

Ss1.1-Pig3-SRG8005C02.5

Sequence:


               
               TTCTTTCTGCATAGACACAGTTTGGTGTCAAACTATCATAAGATCAATAGTAAATATAAA
ATACCTTAGCCAGACTGGGTCTGTATTGTCTGCATTTTATATAAAACTATAGAAAAGTTT
ATGTTGCCTTTTCAACACGTAAGGAGGAACTGTGTCCCCAAATATCGTCAGAGCTTCTCT
TTCCAAATGCAAGAGACTTGTCCTAAATTCAAAGTAGATCTCTTATGTTTTAGAAGTCTG
GTGGTATAGGCACTACAGATACAACATTAAAATTTAAGGAAATGCTTAAGGGAAATGGAA
AGACAAAAAGGCAGCTGGTATAATCAGTTAACTGTGCTCAGTTCTGCTTCAGTTTTTATG
TTGTGTTTCTTCTTCAGGTGAAATAGTATAATCTTAATTTCTTTGAGATGGAGTTTGTAA
GTAACACACTACCAGCAAGTTCAACACTGCTAGTGATTTTAATGTTTGCTTTGTTCATAT
GATAGCTTTAATTCCAAGTTTTATGGTAGTAACTGTATATTATTTGGCTGCTGAATCCTG
TTACAACTTAAAAATTCTGTTGTACATTGTATTATACACATCATTACATATTAACATGAA
GGGGAATATATGTTACATATCAAAAAAATTGTGAATTTGAATTCTAGTATGTTTTAGTGC
TTTTGCAAAAATGTTTATTTTTATATTATGTGATTTTAATATAGATAATTGAACTAGATT
TCTTTGTGATTAATAGTACCATTGAATGAGCGGTATGGAAACAGTGTTACTTGACGTTTT
GAGCTTTCTCAGGTTTATCTAAATCAATGGTAGCTTAACAAATTCCAGACTAATTGTGCA
AAATCATGTTTTAAAATTTATTTCCTATAAGTTTGCATGCAGAAGTGTTCAACTTCAAGT
GTGTGTGTATGTGTGTGTGTATGTGTTGTCTAAGGCATGGCAGCCAACTTCGTATCTCCT
GTTGATAATAACAGCAGAGCTTTGATATAATTATGGCCATTAGAATTGTACCTACCATAG
ATAATTAAAACTGAAAAAGTCTCAATAAAACTATGAAATGTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTTCTGCATAGACACAGTTTGGTGTCAAACTATCATAAGATCAATAGTAAATATAAA
ATACCTTAGCCAGACTGGGTCTGTATTGTCTGCATTTTATATAAAACTATAGAAAAGTTT
ATGTTGCCTTTTCAACACGTAAGGAGGAACTGTGTCCCCAAATATCGTCAGAGCTTCTCT
TTCCAAATGCAAGAGACTTGTCCTAAATTCAAAGTAGATCTCTTATGTTTTAGAAGTCTG
GTGGTATAGGCACTACAGATACAACATTAAAATTTAAGGAAATGCTTAAGGGAAATGGAA
AGACAAAAAGGCAGCTGGTATAATCAGTTAACTGTGCTCAGTTCTGCTTCAGTTTTTATG
TTGTGTTTCTTCTTCAGGTGAAATAGTATAATCTTAATTTCTTTGAGATGGAGTTTGTAA
GTAACACACTACCAGCAAGTTCAACACTGCTAGTGATTTTAATGTTTGCTTTGTTCATAT
GATAGCTTTAATTCCAAGTTTTATGGTAGTAACTGTATATTATTTGGCTGCTGAATCCTG
TTACAACTTAAAAATTCTGTTGTACATTGTATTATACACATCATTACATATTAACATGAA
GGGGAATATATGTTACATATCAAAAAAATTGTGAATTTGAATTCTAGTATGTTTTAGTGC
TTTTGCAAAAATGTTTATTTTTATATTATGTGATTTTAATATAGATAATTGAACTAGATT
TCTTTGTGATTAATAGTACCATTGAATGAGCGGTATGGAAACAGTGTTACTTGACGTTTT
GAGCTTTCTCAGGTTTATCTAAATCAATGGTAGCTTAACAAATTCCAGACTAATTGTGCA
AAATCATGTTTTAAAATTTATTTCCTATAAGTTTGCATGCAGAAGTGTTCAACTTCAAGT
GTGTGTGTATGTGTGTGTGTATGTGTTGTCTAAGGCATGGCAGCCAACTTCGTATCTCCT
GTTGATAATAACAGCAGAGCTTTGATATAATTATGGCCATTAGAATTGTACCTACCATAG
ATAATTAAAACTGAAAAAGTCTCAATAAAACTATGAAATGTGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-115, - strand, RNAz p=0.759549
               

               
               892-995, - strand, RNAz p=0.936521

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, - strand, RNAz p=0.759549
               

               
               892-995, - strand, RNAz p=0.936521

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1062, gnl|bosTau2|chr1 (72680495-72681553)
               

               
               1-1062, gnl|Hg17|chr3 (154040837-154041925)
               

               
               1-1062, gnl|Mm7|chr3 (61164465-61165515)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1062, gnl|bosTau2|chr1 (72680495-72681553)
               

               
               1-1062, gnl|Hg17|chr3 (154040837-154041925)
               

               
               1-1062, gnl|Mm7|chr3 (61164465-61165515)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-115, - strand, RNAz p=0.759549
	892-995, - strand, RNAz p=0.936521

	1-1062, gnl\|bosTau2\|chr1 (72680495-72681553)
	1-1062, gnl\|Hg17\|chr3 (154040837-154041925)
	1-1062, gnl\|Mm7\|chr3 (61164465-61165515)

	cbe (0.239234)
	eye (0.170503)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	kid (0.129735)
	ecc (0.115035)
	ldo (0.0970026)