Ss1.1-Pig3-SRG8005C24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAAAGTCGAGGGGTAACATATCTCTTTCCTATTCAAGTTAAGACTTTTGGTCCTGTAT ATGAGGGAAAAGATTTAATTGCTCAAGCGCGGACAGGAACAGGAAAGACATTCTCTTTTG CCATCCCCTTGATTGAAAGACTCCAAAGAAATCAAGAAACAATTAAAAAAAGCCGTTCAC CAAAGGTACTTGTTTTGGCTCCTACAAGGGAACTGGCAAACCAAGTAGCCAAAGACTTCA AAGATATAACTAAGAAACTCAGTGTAGCATGTTTTTATGGTGGAACATCATATCAAAGCC AAATTAATCACATTCGAAATGGTATTGACATCTTGGTTGGGACCCCTGGTCGTATCAAAG ATCATCTGCAGAGCGGCCGATTAGATCTTTCTAAACTTCGCCATGTTGTGCTTGATGAAG TGGATCAGATGTTAGATTTAGGTTTTGCTGAACAAGTTGAAGATATCATCCACGAATCCT ACAAAACTGATTCTGAAGACAATCCTCAGACTTTACTTTTTTCTGCAACTTGCCCGCAGT GGGTATACAAAGTTGCAAAAAAATACATGAAATCCAGATATGAACAGGTTGACCTTGTTG GGAAAATGACTCAAAAGGCTGCAACTACTGTGGAACATTTGGCCATCCAGTGCCATTGGT CTCAGAGGCCAGCGGTTATTGGAGATGTCCTTCAAGTCTACAGTGGGTCTGAAGGAAGGG CTATTATTTTCTGTGAGACCAAAAAGAATGTAACTGAAATGGCTATGAATCCACACATAA AACAGGTAAGTCTTTTTTCATGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAAAGTCGAGGGGTAACATATCTCTTTCCTATTCAAGTTAAGACTTTTGGTCCTGTAT ATGAGGGAAAAGATTTAATTGCTCAAGCGCGGACAGGAACAGGAAAGACATTCTCTTTTG CCATCCCCTTGATTGAAAGACTCCAAAGAAATCAAGAAACAATTAAAAAAAGCCGTTCAC CAAAGGTACTTGTTTTGGCTCCTACAAGGGAACTGGCAAACCAAGTAGCCAAAGACTTCA AAGATATAACTAAGAAACTCAGTGTAGCATGTTTTTATGGTGGAACATCATATCAAAGCC AAATTAATCACATTCGAAATGGTATTGACATCTTGGTTGGGACCCCTGGTCGTATCAAAG ATCATCTGCAGAGCGGCCGATTAGATCTTTCTAAACTTCGCCATGTTGTGCTTGATGAAG TGGATCAGATGTTAGATTTAGGTTTTGCTGAACAAGTTGAAGATATCATCCACGAATCCT ACAAAACTGATTCTGAAGACAATCCTCAGACTTTACTTTTTTCTGCAACTTGCCCGCAGT GGGTATACAAAGTTGCAAAAAAATACATGAAATCCAGATATGAACAGGTTGACCTTGTTG GGAAAATGACTCAAAAGGCTGCAACTACTGTGGAACATTTGGCCATCCAGTGCCATTGGT CTCAGAGGCCAGCGGTTATTGGAGATGTCCTTCAAGTCTACAGTGGGTCTGAAGGAAGGG CTATTATTTTCTGTGAGACCAAAAAGAATGTAACTGAAATGGCTATGAATCCACACATAA AACAGGTAAGTCTTTTTTCATGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 489-754, - strand, RNAz p=0.955747 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 489-754, - strand, RNAz p=0.955747 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 1-369, gnl|bosTau2|chr11 (44871596-44871228) | |
| 1-369, gnl|Hg17|chr10 (70391913-70396832) | |
| 1-369, gnl|Mm7|chr10 (62113830-62110733) | |
| 489-635, gnl|bosTau2|chr28 (16489016-16488870) | |
| 489-635, gnl|canFam2|chr4 (23288508-23288681) | |
| 489-635, gnl|danRer3|chrNA (101561401-101561250) | |
| 489-635, gnl|dasNov1|scaffold_10716 (4678-4851) | |
| 489-635, gnl|echTel1|scaffold_195948 (3212-3039) | |
| 489-635, gnl|fr1|chrUn (319958118-319957952) | |
| 489-635, gnl|galGal2|chr6 (10082083-10082264) | |
| 489-635, gnl|hg17|chr10 (70343820-70343993) | |
| 489-635, gnl|Hg17|chr10 (70343820-70343966) | |
| 489-635, gnl|loxAfr1|scaffold_25402 (22411-22253) | |
| 489-635, gnl|mm7|chr10 (62158797-62158624) | |
| 489-635, gnl|Mm7|chr10 (62158795-62158649) | |
| 489-635, gnl|monDom2|scaffold_242 (439560-439391) | |
| 489-635, gnl|oryCun1|scaffold_176819 (74812-74639) | |
| 489-635, gnl|panTro1|chr8 (71497032-71497205) | |
| 489-635, gnl|rheMac2|chr9 (68110631-68110458) | |
| 489-635, gnl|rn3|chr20 (29899747-29899574) | |
| 489-635, gnl|tetNig1|chr5 (3778822-3778975) | |
| 489-635, gnl|xenTro1|scaffold_228 (489451-489278) | |
| 636-802, gnl|bosTau2|chr28 (16483517-16483351) | |
| 636-802, gnl|canFam2|chr4 (23290997-23290848) | |
| 636-802, gnl|canFam2|chr4 (23290848-23290994) | |
| 636-802, gnl|canFam2|chr4 (23290832-23291003) | |
| 636-802, gnl|danRer3|chrNA (101559879-101560028) | |
| 636-802, gnl|danRer3|chrNA (101560028-101559882) | |
| 636-802, gnl|danRer3|chrNA (101560032-101559877) | |
| 636-802, gnl|dasNov1|scaffold_10716 (9185-9356) | |
| 636-802, gnl|dasNov1|scaffold_54760 (4-125) | |
| 636-802, gnl|dasNov1|scaffold_54760 (125-4) | |
| 636-802, gnl|echTel1|scaffold_173896 (501-329) | |
| 636-802, gnl|echTel1|scaffold_38780 (775-628) | |
| 636-802, gnl|echTel1|scaffold_38780 (628-772) | |
| 636-802, gnl|fr1|chrUn (319956254-319956403) | |
| 636-802, gnl|fr1|chrUn (319956403-319956257) | |
| 636-802, gnl|fr1|chrUn (319956405-319956250) | |
| 636-802, gnl|galGal2|chr6 (10082800-10082962) | |
| 636-802, gnl|hg17|chr10 (70349579-70349751) | |
| 636-802, gnl|Hg17|chr10 (70349594-70349761) | |
| 636-802, gnl|hg17|chr2 (32339611-32339757) | |
| 636-802, gnl|hg17|chr3 (155553588-155553737) | |
| 636-802, gnl|loxAfr1|scaffold_25402 (21383-21525) | |
| 636-802, gnl|loxAfr1|scaffold_25402 (21525-21383) | |
| 636-802, gnl|loxAfr1|scaffold_25402 (21543-21369) | |
| 636-802, gnl|mm7|chr10 (62152928-62152761) | |
| 636-802, gnl|Mm7|chr10 (62152914-62152749) | |
| 636-802, gnl|mm7|chr9 (85072237-85072386) | |
| 636-802, gnl|mm7|chr9 (85072386-85072240) | |
| 636-802, gnl|monDom2|scaffold_0 (10081947-10081798) | |
| 636-802, gnl|monDom2|scaffold_0 (10081798-10081944) | |
| 636-802, gnl|monDom2|scaffold_242 (438454-438287) | |
| 636-802, gnl|oryCun1|scaffold_176819 (70155-69983) | |
| 636-802, gnl|oryCun1|scaffold_207670 (49437-49585) | |
| 636-802, gnl|oryCun1|scaffold_207670 (49585-49440) | |
| 636-802, gnl|panTro1|chr12 (33365512-33365363) | |
| 636-802, gnl|panTro1|chr12 (33365363-33365509) | |
| 636-802, gnl|panTro1|chr8 (71502886-71503063) | |
| 636-802, gnl|rheMac2|chr13 (32242786-32242932) | |
| 636-802, gnl|rheMac2|chr2 (133297441-133297298) | |
| 636-802, gnl|rheMac2|chr9 (68105656-68105484) | |
| 636-802, gnl|rn3|chr20 (29895293-29895438) | |
| 636-802, gnl|rn3|chr20 (29895438-29895295) | |
| 636-802, gnl|rn3|chr20 (29895449-29895284) | |
| 636-802, gnl|tetNig1|chr5 (3779536-3779387) | |
| 636-802, gnl|tetNig1|chr5 (3779387-3779533) | |
| 636-802, gnl|tetNig1|chr5 (3779378-3779540) | |
| 636-802, gnl|xenTro1|scaffold_228 (488991-488816) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-369, gnl|bosTau2|chr11 (44871596-44871228) | |
| 1-369, gnl|Hg17|chr10 (70391913-70396832) | |
| 1-369, gnl|Mm7|chr10 (62113830-62110733) | |
| 489-635, gnl|bosTau2|chr28 (16489016-16488870) | |
| 489-635, gnl|canFam2|chr4 (23288508-23288681) | |
| 489-635, gnl|danRer3|chrNA (101561401-101561250) | |
| 489-635, gnl|dasNov1|scaffold_10716 (4678-4851) | |
| 489-635, gnl|echTel1|scaffold_195948 (3212-3039) | |
| 489-635, gnl|fr1|chrUn (319958118-319957952) | |
| 489-635, gnl|galGal2|chr6 (10082083-10082264) | |
| 489-635, gnl|hg17|chr10 (70343820-70343993) | |
| 489-635, gnl|Hg17|chr10 (70343820-70343966) | |
| 489-635, gnl|loxAfr1|scaffold_25402 (22411-22253) | |
| 489-635, gnl|mm7|chr10 (62158797-62158624) | |
| 489-635, gnl|Mm7|chr10 (62158795-62158649) | |
| 489-635, gnl|monDom2|scaffold_242 (439560-439391) | |
| 489-635, gnl|oryCun1|scaffold_176819 (74812-74639) | |
| 489-635, gnl|panTro1|chr8 (71497032-71497205) | |
| 489-635, gnl|rheMac2|chr9 (68110631-68110458) | |
| 489-635, gnl|rn3|chr20 (29899747-29899574) | |
| 489-635, gnl|tetNig1|chr5 (3778822-3778975) | |
| 489-635, gnl|xenTro1|scaffold_228 (489451-489278) | |
| 636-802, gnl|bosTau2|chr28 (16483517-16483351) | |
| 636-802, gnl|canFam2|chr4 (23290997-23290848) | |
| 636-802, gnl|canFam2|chr4 (23290848-23290994) | |
| 636-802, gnl|canFam2|chr4 (23290832-23291003) | |
| 636-802, gnl|danRer3|chrNA (101559879-101560028) | |
| 636-802, gnl|danRer3|chrNA (101560028-101559882) | |
| 636-802, gnl|danRer3|chrNA (101560032-101559877) | |
| 636-802, gnl|dasNov1|scaffold_10716 (9185-9356) | |
| 636-802, gnl|dasNov1|scaffold_54760 (4-125) | |
| 636-802, gnl|dasNov1|scaffold_54760 (125-4) | |
| 636-802, gnl|echTel1|scaffold_173896 (501-329) | |
| 636-802, gnl|echTel1|scaffold_38780 (775-628) | |
| 636-802, gnl|echTel1|scaffold_38780 (628-772) | |
| 636-802, gnl|fr1|chrUn (319956254-319956403) | |
| 636-802, gnl|fr1|chrUn (319956403-319956257) | |
| 636-802, gnl|fr1|chrUn (319956405-319956250) | |
| 636-802, gnl|galGal2|chr6 (10082800-10082962) | |
| 636-802, gnl|hg17|chr10 (70349579-70349751) | |
| 636-802, gnl|Hg17|chr10 (70349594-70349761) | |
| 636-802, gnl|hg17|chr2 (32339611-32339757) | |
| 636-802, gnl|hg17|chr3 (155553588-155553737) | |
| 636-802, gnl|loxAfr1|scaffold_25402 (21383-21525) | |
| 636-802, gnl|loxAfr1|scaffold_25402 (21525-21383) | |
| 636-802, gnl|loxAfr1|scaffold_25402 (21543-21369) | |
| 636-802, gnl|mm7|chr10 (62152928-62152761) | |
| 636-802, gnl|Mm7|chr10 (62152914-62152749) | |
| 636-802, gnl|mm7|chr9 (85072237-85072386) | |
| 636-802, gnl|mm7|chr9 (85072386-85072240) | |
| 636-802, gnl|monDom2|scaffold_0 (10081947-10081798) | |
| 636-802, gnl|monDom2|scaffold_0 (10081798-10081944) | |
| 636-802, gnl|monDom2|scaffold_242 (438454-438287) | |
| 636-802, gnl|oryCun1|scaffold_176819 (70155-69983) | |
| 636-802, gnl|oryCun1|scaffold_207670 (49437-49585) | |
| 636-802, gnl|oryCun1|scaffold_207670 (49585-49440) | |
| 636-802, gnl|panTro1|chr12 (33365512-33365363) | |
| 636-802, gnl|panTro1|chr12 (33365363-33365509) | |
| 636-802, gnl|panTro1|chr8 (71502886-71503063) | |
| 636-802, gnl|rheMac2|chr13 (32242786-32242932) | |
| 636-802, gnl|rheMac2|chr2 (133297441-133297298) | |
| 636-802, gnl|rheMac2|chr9 (68105656-68105484) | |
| 636-802, gnl|rn3|chr20 (29895293-29895438) | |
| 636-802, gnl|rn3|chr20 (29895438-29895295) | |
| 636-802, gnl|rn3|chr20 (29895449-29895284) | |
| 636-802, gnl|tetNig1|chr5 (3779536-3779387) | |
| 636-802, gnl|tetNig1|chr5 (3779387-3779533) | |
| 636-802, gnl|tetNig1|chr5 (3779378-3779540) | |
| 636-802, gnl|xenTro1|scaffold_228 (488991-488816) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.0993246) |